Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 0.0e+00 1243.4 771 100.0
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 3.9e-148 529.6 823 48.8
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.0e-95 355.5 597 43.4
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 3.3e-86 323.9 612 36.8
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 2.8e-85 320.9 565 38.1
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 8.0e-85 319.3 612 36.3
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 6.8e-84 316.2 606 37.8
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 2.9e-82 310.8 587 39.5
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 3.2e-81 307.4 582 38.0
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 9.5e-78 295.8 605 36.2
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.4e-76 292.0 587 38.8
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 1.5e-75 288.5 598 39.1
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 1.7e-74 285.0 468 42.9
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 6.4e-74 283.1 598 38.8
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.4e-73 282.0 778 32.8
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 5.4e-73 280.0 564 39.0
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 7.0e-73 279.6 480 40.6
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 8.6e-71 272.7 594 33.7
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 8.6e-71 272.7 590 35.6
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.1e-68 265.8 488 40.4
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.4e-68 265.4 430 41.2
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 2.3e-68 264.6 607 35.7
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 5.2e-68 263.5 478 39.1
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 1.5e-67 261.9 580 34.7
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 3.4e-67 260.8 622 34.9
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.7e-66 258.5 474 37.8
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 3.2e-65 254.2 496 38.1
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 4.1e-65 253.8 495 39.0
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 3.3e-62 244.2 364 45.3
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 8.1e-61 239.6 564 39.7
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 4.0e-60 237.3 645 39.8
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 1.2e-59 235.7 561 38.5
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 5.8e-59 233.4 207 59.4
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 4.9e-58 230.3 364 43.1
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 6.6e-55 219.9 559 36.7
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.4e-52 211.5 411 35.5
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 1.3e-50 205.7 267 45.3
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 1.1e-49 202.6 587 32.9
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 5.1e-47 193.7 264 44.7
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 2.8e-45 188.0 389 40.9
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 1.8e-44 185.3 368 41.6
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 6.9e-44 183.3 252 44.0
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.9e-41 175.3 588 26.4
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.2e-40 172.6 534 28.7
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.0e-39 169.5 194 52.6
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 2.3e-39 168.3 209 49.3
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 2.8e-37 161.4 213 47.4
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 6.2e-37 160.2 326 38.3
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.1e-36 159.5 362 32.9
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 5.3e-36 157.1 340 37.4
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 9.0e-36 156.4 317 33.8
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 9.0e-36 156.4 324 40.1
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.5e-35 155.6 403 32.0
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 3.4e-35 154.5 374 37.7
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 3.4e-35 154.5 339 33.6
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 4.5e-35 154.1 554 27.8
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 2.9e-34 151.4 601 26.6
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 6.4e-34 150.2 288 38.2
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 1.2e-32 146.0 273 39.9
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.6e-32 145.6 418 31.6
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 1.6e-32 145.6 381 36.7
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.6e-32 145.6 299 39.1
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 3.9e-31 141.0 317 41.6
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 8.7e-31 139.8 181 50.8
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 1.1e-30 139.4 554 26.4
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.5e-30 139.0 211 47.4
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 2.5e-30 138.3 375 39.5
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.3e-30 137.9 325 32.9
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 5.7e-30 137.1 363 30.6
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 7.4e-30 136.7 203 45.8
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 7.4e-30 136.7 437 28.1
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 3.7e-29 134.4 170 44.1
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 1.1e-28 132.9 327 33.6
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 1.4e-28 132.5 232 40.9
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.4e-28 132.5 279 35.1
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.4e-28 131.7 394 32.0
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 5.3e-28 130.6 157 52.9
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 6.9e-28 130.2 366 35.0
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 1.2e-27 129.4 334 37.1
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 5.8e-27 127.1 266 37.6
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.0e-26 126.3 361 33.8
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 1.0e-26 126.3 345 34.5
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 2.2e-26 125.2 189 43.9
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 2.2e-26 125.2 266 48.5
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 2.9e-26 124.8 205 43.4
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 3.8e-26 124.4 172 45.9
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 3.8e-26 124.4 375 33.6
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 4.9e-26 124.0 300 32.3
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 2.5e-25 121.7 262 38.2
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 3.2e-25 121.3 268 32.5
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 5.5e-25 120.6 202 39.1
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.2e-24 119.4 374 36.9
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.0e-23 116.3 267 34.1
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.0e-23 116.3 267 33.7
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.0e-23 116.3 267 33.7
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.3e-23 115.9 265 34.0
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 2.3e-23 115.2 265 35.5
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 3.9e-23 114.4 259 35.9
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 5.1e-23 114.0 373 32.4
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 6.7e-23 113.6 199 38.2
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 8.7e-23 113.2 143 43.4
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 4.3e-22 110.9 267 31.8
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 2.8e-21 108.2 267 31.5
FAN21G2926 Fragaria x ananassa HOM05D006067 ORTHO05D007327 8.2e-21 106.7 261 38.7
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 2.4e-20 105.1 236 33.5
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.4e-20 105.1 202 35.6
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 4.1e-20 104.4 174 37.9
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 6.9e-20 103.6 202 35.6
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 3.4e-19 101.3 259 28.6
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 4.5e-19 100.9 267 30.7
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 5.9e-19 100.5 96 47.9
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.7e-18 99.0 186 39.2
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 2.7e-16 91.7 89 48.3
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 7.9e-16 90.1 122 43.4
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.4e-15 89.4 157 34.4
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 1.5e-14 85.9 90 48.9
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 1.5e-14 85.9 75 58.7
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 4.8e-13 80.9 66 57.6
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.4e-12 79.3 141 34.8
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 4.1e-12 77.8 83 44.6
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 6.9e-12 77.0 83 45.8
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 5.9e-11 73.9 341 24.9
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 7.7e-11 73.6 157 33.1
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 6.5e-10 70.5 48 64.6
Actinidia09807 Actinidia chinensis HOM05D006067 ORTHO05D007327 4.2e-09 67.8 250 29.6
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 3.6e-08 64.7 130 33.1
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 6.7e-07 60.5 31 80.6
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 2.0e-06 58.9 127 30.7
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 9.7e-06 56.6 30 73.3


User provided reference genes

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