Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 7.6e-26 119.8 63 100.0
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 1.1e-21 105.9 63 85.7
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 5.7e-21 103.6 63 76.2
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 2.4e-19 98.2 63 77.8
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 3.4e-18 94.4 63 73.0
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 3.8e-17 90.9 63 71.4
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 5.5e-16 87.0 62 62.9
FAN25G0037 Fragaria x ananassa HOM05D008148 ORTHO05D010295 6.1e-15 83.6 66 66.7
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 7.9e-15 83.2 61 59.0
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 1.8e-14 82.0 44 81.8
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 6.7e-14 80.1 63 60.3
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 1.9e-13 78.6 46 73.9
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 1.9e-13 78.6 47 70.2
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 4.3e-13 77.4 64 60.9
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 4.3e-13 77.4 59 61.0
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 5.7e-13 77.0 47 68.1
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 9.7e-13 76.3 59 62.7
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 2.8e-12 74.7 47 68.1
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 2.8e-12 74.7 62 58.1
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 2.8e-12 74.7 61 63.9
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 4.8e-12 73.9 62 54.8
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 4.8e-12 73.9 47 66.0
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 6.3e-12 73.6 47 66.0
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 6.3e-12 73.6 47 66.0
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 6.3e-12 73.6 47 66.0
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 6.3e-12 73.6 47 66.0
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 6.3e-12 73.6 47 66.0
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 8.2e-12 73.2 46 76.1
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 1.1e-11 72.8 62 54.8
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 1.4e-11 72.4 47 63.8
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 1.4e-11 72.4 46 69.6
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 1.8e-11 72.0 47 66.0
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 3.1e-11 71.2 57 59.6
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 3.1e-11 71.2 47 59.6
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 3.1e-11 71.2 56 64.3
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 3.1e-11 71.2 47 61.7
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 4.1e-11 70.9 45 64.4
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 4.1e-11 70.9 45 64.4
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 4.1e-11 70.9 40 70.0
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 6.9e-11 70.1 40 67.5
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 6.9e-11 70.1 43 69.8
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 9.1e-11 69.7 40 67.5
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 9.1e-11 69.7 40 67.5
Lj3g0020996 Lotus japonicus HOM05D008148 ORTHO05D010295 9.1e-11 69.7 47 59.6
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 2.0e-10 68.6 40 67.5
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 2.0e-10 68.6 40 67.5
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 2.6e-10 68.2 59 52.5
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 4.5e-10 67.4 40 65.0
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 4.5e-10 67.4 59 52.5
Phvul.005G081700 Phaseolus vulgaris HOM05D008148 ORTHO05D010295 5.9e-10 67.0 44 59.1
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 7.7e-10 66.6 62 51.6
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 1.0e-09 66.2 40 65.0
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 1.3e-09 65.9 60 48.3
Glyma.12G230300 Glycine max HOM05D008148 ORTHO05D010295 1.7e-09 65.5 47 59.6
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 1.7e-09 65.5 57 54.4
Atru.chr1.2298 Acer truncatum HOM05D008148 ORTHO05D010295 5.0e-09 63.9 57 52.6
Cc05_g11020 Coffea canephora HOM05D008148 ORTHO05D010295 1.9e-08 62.0 52 51.9
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 3.2e-08 61.2 36 66.7
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 3.2e-08 61.2 46 60.9
SHI27618 Sapria himalayana HOM05D008148 ORTHO05D010295 2.1e-07 58.5 40 67.5
Migut.H02001 Erythranthe guttata HOM05D008148 ORTHO05D010295 3.9e-06 54.3 34 64.7


User provided reference genes

Program Settings