Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 3.0e-293 1011.1 530 100.0
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 1.7e-251 872.5 550 85.1
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 3.0e-240 835.1 550 80.4
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 2.5e-239 832.0 549 80.9
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 8.1e-238 827.0 550 75.6
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 9.0e-237 823.5 550 79.1
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 2.6e-236 822.0 557 75.6
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 5.8e-236 820.8 550 74.5
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 2.2e-235 818.9 550 77.5
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.2e-235 818.9 550 79.3
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 3.8e-235 818.1 550 74.9
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 3.8e-235 818.1 550 74.9
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 4.9e-235 817.8 550 76.7
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 8.4e-235 817.0 550 75.1
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.4e-234 816.2 550 79.3
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 5.5e-234 814.3 550 79.1
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 9.3e-234 813.5 550 77.8
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 2.1e-233 812.4 550 74.7
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.8e-232 809.3 550 78.2
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 2.3e-232 808.9 550 78.5
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 3.9e-232 808.1 553 73.4
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 3.3e-231 805.1 550 77.6
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 3.3e-231 805.1 550 77.6
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 9.6e-231 803.5 551 78.0
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 4.8e-230 801.2 550 76.9
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 6.3e-230 800.8 548 78.6
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 8.2e-230 800.4 550 78.2
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 4.1e-229 798.1 550 76.4
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 9.0e-229 797.0 550 76.4
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 1.2e-228 796.6 550 74.4
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 1.5e-228 796.2 550 77.6
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.5e-228 796.2 550 73.5
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 1.5e-228 796.2 550 76.2
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 2.0e-228 795.8 550 73.3
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 5.9e-228 794.3 550 77.8
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.0e-227 793.5 549 76.1
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 3.8e-227 791.6 550 73.5
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 3.2e-226 788.5 550 76.5
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 9.3e-226 786.9 550 76.0
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 9.3e-226 786.9 550 75.5
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.1e-225 785.8 550 73.3
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 6.1e-225 784.3 550 78.7
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 6.1e-225 784.3 550 76.4
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 7.9e-225 783.9 550 75.8
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 1.8e-224 782.7 550 77.1
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 2.3e-224 782.3 548 75.9
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 3.9e-224 781.6 553 73.4
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 6.7e-224 780.8 551 76.4
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 8.7e-224 780.4 549 73.4
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.1e-223 780.0 588 69.9
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 1.5e-223 779.6 550 76.5
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 1.5e-223 779.6 548 75.7
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 1.3e-222 776.5 473 87.5
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 1.4e-221 773.1 571 72.7
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 3.1e-221 771.9 550 75.3
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 5.3e-221 771.2 557 69.5
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 2.6e-220 768.8 550 72.4
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 6.5e-219 764.2 550 72.5
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 8.5e-219 763.8 583 69.5
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 1.4e-218 763.1 550 72.7
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 3.2e-218 761.9 533 76.5
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 5.5e-218 761.1 550 69.8
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 5.5e-218 761.1 550 69.8
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 9.4e-218 760.4 530 72.5
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 9.4e-218 760.4 611 66.1
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.2e-217 760.0 611 66.0
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 2.7e-217 758.8 550 71.1
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 2.7e-217 758.8 555 70.6
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 3.6e-217 758.4 550 70.4
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 4.6e-217 758.1 550 69.6
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 4.6e-217 758.1 550 69.6
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 6.1e-217 757.7 550 71.8
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 3.0e-216 755.4 550 71.5
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 6.7e-216 754.2 550 70.9
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 2.8e-214 748.8 550 71.3
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 4.8e-214 748.0 551 76.4
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 2.4e-213 745.7 550 72.5
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 9.1e-213 743.8 554 69.1
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 4.5e-212 741.5 550 72.4
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 9.4e-210 733.8 641 62.1
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 2.7e-209 732.3 620 65.5
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 3.6e-209 731.9 536 71.3
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 1.4e-205 719.9 548 68.8
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 1.7e-203 713.0 549 67.6
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 3.6e-201 705.3 529 69.4
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.2e-199 700.3 550 67.8
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 1.2e-191 673.7 527 71.0
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.5e-191 673.3 545 66.8
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 2.2e-187 659.4 545 61.8
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 7.2e-186 654.4 535 65.2
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 3.1e-181 639.0 525 64.0
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 4.3e-178 628.6 376 82.4
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 5.6e-178 628.2 377 82.8
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 4.1e-173 612.1 533 63.0
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 5.4e-173 611.7 400 75.2
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 5.0e-171 605.1 753 48.7
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 4.9e-166 588.6 590 54.9
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 9.5e-154 547.7 437 64.5
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 9.2e-149 531.2 549 51.2
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 1.1e-146 524.2 551 50.5
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 3.9e-139 499.2 376 67.8
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 4.3e-138 495.7 389 67.4
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.1e-133 481.1 480 53.8
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 3.5e-132 476.1 549 47.0
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 2.8e-129 466.5 269 84.4
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 6.5e-118 428.7 329 63.5
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 1.6e-116 424.1 519 45.9
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 1.6e-113 414.1 325 70.2
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 1.6e-113 414.1 382 59.7
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 4.2e-93 346.3 378 55.6
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 2.3e-91 340.5 220 75.9
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 2.0e-87 327.4 272 64.0
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.6e-84 317.8 282 60.6
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 1.8e-83 314.3 641 33.9
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 1.3e-73 281.6 192 76.6
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 6.1e-68 262.7 154 85.1
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 2.8e-65 253.8 152 79.6
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 2.5e-61 240.7 139 84.2
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 8.3e-57 225.7 416 35.3
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 8.3e-57 225.7 167 69.5
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.7e-55 220.7 246 51.2
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.0e-55 219.5 152 74.3
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.1e-53 215.3 152 73.0
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 3.1e-51 207.2 174 62.1
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 1.6e-47 194.9 163 57.1
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 2.1e-47 194.5 109 85.3
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 6.0e-47 193.0 563 26.8
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 8.1e-44 182.6 424 31.1
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 6.4e-41 172.9 180 55.0
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 1.9e-37 161.4 85 95.3
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 4.3e-37 160.2 834 21.7
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.1e-36 157.9 250 41.2
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 2.1e-31 141.4 148 52.7
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.3e-25 122.1 113 61.9
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.1e-24 119.0 146 45.2
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 3.2e-24 117.5 201 39.3
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 1.2e-23 115.5 237 32.1
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.8e-09 67.4 51 66.7
Ciclev10024667m.g Citrus clementina HOM05D005139 ORTHO05D152313 7.9e-07 59.7 58 56.9
ClCG07G010240 Citrullus lanatus HOM05D005139 ORTHO05D006125 5.1e-06 57.0 70 52.9
Carub.0002s1494 Capsella rubella HOM05D001168 ORTHO05D001044 6.7e-06 56.6 65 50.8


User provided reference genes

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