Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 3.6e-61 238.0 118 100.0
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 3.0e-39 165.2 109 80.7
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 5.8e-35 151.0 113 72.6
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.8e-29 132.1 114 62.3
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 1.3e-26 123.2 103 65.0
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 1.3e-26 123.2 115 64.3
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 6.4e-26 120.9 94 66.0
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.4e-25 119.8 109 63.3
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.4e-25 119.0 109 62.4
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 9.3e-25 117.1 106 63.2
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.2e-24 116.7 109 62.4
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.3e-23 113.2 95 62.1
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 5.1e-23 111.3 105 58.1
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 8.7e-23 110.5 88 63.6
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.5e-22 109.8 111 55.0
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.3e-22 108.2 115 55.7
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 5.6e-22 107.8 114 58.8
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 5.6e-22 107.8 104 57.7
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 5.6e-22 107.8 104 57.7
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 9.6e-22 107.1 110 60.9
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 8.1e-21 104.0 84 71.4
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.1e-20 103.6 89 65.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.1e-20 102.1 102 54.9
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.0e-20 101.7 105 54.3
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 6.9e-20 100.9 96 61.5
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 9.0e-20 100.5 103 54.4
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.5e-19 99.8 97 59.8
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 2.6e-19 99.0 97 62.9
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.8e-19 97.8 103 52.4
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 9.9e-19 97.1 105 53.3
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.9e-18 94.7 105 51.4
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 8.4e-18 94.0 91 57.1
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.4e-17 93.2 74 62.2
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 4.2e-17 91.7 101 49.5
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.2e-17 91.7 112 54.5
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 4.2e-17 91.7 101 52.5
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 9.3e-17 90.5 98 51.0
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 9.3e-17 90.5 100 57.0
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.3e-17 90.5 102 56.9
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.5e-16 88.6 101 49.5
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.5e-16 88.6 96 53.1
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.5e-16 88.6 108 47.2
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 4.6e-16 88.2 108 46.3
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.6e-16 88.2 90 52.2
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 4.6e-16 88.2 91 51.6
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.3e-15 86.7 89 53.9
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.3e-15 86.7 86 54.7
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 1.8e-15 86.3 121 48.8
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 3.0e-15 85.5 84 57.1
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 6.7e-15 84.3 109 45.0
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 6.7e-15 84.3 92 47.8
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 8.7e-15 84.0 81 58.0
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.1e-14 83.6 98 49.0
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.5e-14 83.2 123 44.7
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 1.5e-14 83.2 101 46.5
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.5e-14 82.4 85 50.6
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.3e-14 82.0 72 59.7
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 3.3e-14 82.0 80 56.2
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 4.3e-14 81.6 78 57.7
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 4.3e-14 81.6 100 45.0
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 4.3e-14 81.6 116 48.3
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 7.4e-14 80.9 97 46.4
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 7.4e-14 80.9 78 51.3
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 9.6e-14 80.5 83 54.2
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.3e-13 80.1 110 46.4
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.3e-13 80.1 68 58.8
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.6e-13 79.7 85 51.8
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.6e-13 79.7 112 43.8
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.6e-13 79.7 112 43.8
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.6e-13 79.7 98 43.9
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 2.1e-13 79.3 74 56.8
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 2.1e-13 79.3 66 57.6
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 2.8e-13 79.0 81 50.6
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 2.8e-13 79.0 81 54.3
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 2.8e-13 79.0 91 52.7
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.8e-13 79.0 96 46.9
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 6.2e-13 77.8 62 59.7
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 6.2e-13 77.8 67 64.2
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 6.2e-13 77.8 120 42.5
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 8.1e-13 77.4 58 62.1
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 8.1e-13 77.4 61 60.7
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 8.1e-13 77.4 77 57.1
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 8.1e-13 77.4 82 53.7
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 8.1e-13 77.4 98 42.9
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-12 77.0 115 44.3
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-12 77.0 106 45.3
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.1e-12 77.0 85 51.8
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.4e-12 76.6 75 50.7
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.4e-12 76.6 48 68.8
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.4e-12 76.6 106 45.3
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.4e-12 76.6 109 41.3
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.8e-12 76.3 92 44.6
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-12 76.3 106 45.3
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.8e-12 76.3 105 50.5
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 2.4e-12 75.9 115 43.5
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 3.1e-12 75.5 86 52.3
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 3.1e-12 75.5 53 60.4
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.1e-12 75.5 53 60.4
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.0e-12 75.1 62 58.1
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 4.0e-12 75.1 75 53.3
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 4.0e-12 75.1 85 52.9
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 4.0e-12 75.1 72 56.9
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.3e-12 74.7 55 69.1
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 5.3e-12 74.7 68 54.4
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 5.3e-12 74.7 56 58.9
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 6.9e-12 74.3 104 45.2
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.2e-11 73.6 84 53.6
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.2e-11 73.6 78 55.1
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.2e-11 73.6 116 44.8
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.2e-11 73.6 46 71.7
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 2.0e-11 72.8 82 47.6
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.6e-11 72.4 75 52.0
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.6e-11 72.4 115 43.5
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 3.4e-11 72.0 74 54.1
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 4.5e-11 71.6 61 59.0
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.8e-11 71.2 53 60.4
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 2.2e-10 69.3 83 51.8
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.2e-10 69.3 78 53.8
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 2.9e-10 68.9 85 49.4
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 2.9e-10 68.9 116 43.1
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 3.8e-10 68.6 48 66.7
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.8e-10 68.6 77 53.2
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 3.8e-10 68.6 83 47.0
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 3.8e-10 68.6 115 36.5
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 3.8e-10 68.6 116 43.1
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 4.9e-10 68.2 111 41.4
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 8.4e-10 67.4 75 58.7
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.9e-09 66.2 67 47.8
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 2.4e-09 65.9 102 41.2
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.4e-09 65.9 69 53.6
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 7.1e-09 64.3 58 50.0
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 9.3e-09 63.9 44 61.4
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.3e-09 63.9 62 51.6
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.2e-08 63.5 94 43.6
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.2e-08 63.5 61 50.8
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 7.9e-08 60.8 64 48.4
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.0e-07 60.5 56 48.2
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.3e-07 60.1 61 47.5
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.3e-07 60.1 61 47.5
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 3.0e-07 58.9 64 48.4
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.9e-07 58.5 75 45.3
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 5.1e-07 58.2 48 56.2
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 5.1e-07 58.2 60 48.3
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 6.7e-07 57.8 64 43.8
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 8.7e-07 57.4 82 45.1
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.1e-06 57.0 105 33.3
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.9e-06 56.2 33 63.6
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.5e-06 55.8 49 59.2


User provided reference genes

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