Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 6.9e-237 823.5 406 100.0
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 4.1e-213 744.6 404 89.1
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 2.8e-206 721.8 397 87.7
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 3.5e-196 688.3 404 83.4
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 9.5e-186 653.7 407 80.6
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 8.0e-185 650.6 408 80.1
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.4e-181 639.8 404 77.2
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.0e-180 636.0 406 77.1
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.6e-179 630.6 446 73.8
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.1e-178 630.2 404 75.5
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.1e-177 624.4 432 74.8
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.8e-176 622.9 427 75.4
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 5.8e-175 617.8 391 76.7
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.9e-174 615.5 405 74.1
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 6.4e-174 614.4 404 75.0
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 3.9e-171 605.1 408 74.0
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.5e-170 603.2 404 73.3
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.5e-170 603.2 401 73.8
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.5e-170 602.4 404 74.3
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.6e-169 599.7 404 73.3
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.1e-168 597.0 407 73.0
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.8e-168 596.3 398 72.4
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 2.3e-168 595.9 404 72.3
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.3e-168 595.9 395 74.2
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.3e-168 595.9 406 71.4
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 8.9e-168 594.0 405 73.6
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 2.0e-167 592.8 401 71.6
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 7.5e-167 590.9 391 73.1
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 9.8e-167 590.5 398 73.4
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.8e-167 590.5 405 73.3
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.8e-167 590.5 404 73.3
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 9.8e-167 590.5 402 72.1
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 6.4e-166 587.8 404 72.3
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 8.3e-166 587.4 405 71.4
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 8.3e-166 587.4 406 71.9
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.4e-165 586.6 409 72.4
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.4e-165 586.6 405 69.9
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.9e-165 586.3 404 73.0
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 2.4e-165 585.9 401 70.3
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.2e-165 585.5 403 71.5
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 3.2e-165 585.5 411 71.8
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 7.0e-165 584.3 392 72.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 7.8e-164 580.9 400 72.0
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.3e-163 580.1 408 72.3
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 3.0e-163 578.9 411 71.0
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.9e-163 578.6 399 70.9
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.1e-162 577.0 408 72.1
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 5.6e-162 574.7 422 68.2
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.6e-162 574.7 397 69.8
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.6e-161 573.2 416 68.8
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.6e-161 573.2 406 68.5
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.4e-160 570.1 404 70.0
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 2.3e-160 569.3 396 71.2
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.1e-160 568.9 430 66.3
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.2e-159 567.0 413 71.4
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 2.0e-159 566.2 406 70.2
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 3.4e-159 565.5 473 61.9
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.4e-159 565.5 406 70.0
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.9e-159 563.9 456 64.7
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 4.9e-158 561.6 399 69.9
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 8.3e-158 560.8 407 67.8
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 3.5e-156 555.4 411 69.8
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 3.0e-155 552.4 405 68.1
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 3.0e-155 552.4 404 68.8
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 3.0e-155 552.4 450 63.8
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 3.9e-155 552.0 440 64.8
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.5e-154 550.1 400 70.0
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.9e-154 549.7 442 63.6
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 5.6e-154 548.1 411 69.3
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 9.5e-154 547.4 440 63.6
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.2e-153 547.0 432 65.0
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.6e-153 546.6 405 67.7
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 2.8e-153 545.8 399 69.2
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 4.7e-153 545.0 440 63.4
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 6.2e-153 544.7 415 67.5
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.1e-152 543.9 440 63.2
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.8e-152 543.1 415 67.0
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 2.6e-151 539.3 410 66.3
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.7e-150 536.6 405 67.4
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.2e-150 536.2 353 75.1
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.1e-149 533.9 413 66.1
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.4e-149 532.7 400 67.5
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 2.1e-148 529.6 410 65.6
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 2.1e-148 529.6 441 61.2
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 3.5e-148 528.9 394 67.0
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 4.3e-146 521.9 398 66.1
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.6e-145 520.0 404 62.9
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 2.1e-145 519.6 398 65.8
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 6.2e-145 518.1 403 66.3
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.1e-144 517.3 401 65.3
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.4e-144 516.9 393 66.4
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.4e-144 516.9 406 64.8
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.4e-144 516.2 404 65.8
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.4e-144 516.2 403 64.8
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.3e-142 510.4 407 62.9
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.9e-142 509.2 470 56.6
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.9e-141 506.5 397 65.2
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 2.7e-140 502.7 398 65.1
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 2.7e-140 502.7 411 65.0
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.3e-139 500.4 407 63.4
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.7e-139 500.0 402 63.7
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.1e-139 498.4 407 63.4
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 7.3e-138 494.6 406 65.3
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 4.8e-137 491.9 404 62.6
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 8.1e-137 491.1 406 62.8
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.1e-136 490.7 398 64.1
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.1e-136 490.7 400 62.8
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 2.4e-136 489.6 408 61.0
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-135 487.3 400 62.5
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 2.6e-135 486.1 408 60.8
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.6e-135 486.1 406 63.3
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 5.8e-135 485.0 400 62.0
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 2.2e-134 483.0 405 61.5
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 2.2e-134 483.0 406 60.8
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.9e-134 482.6 408 60.0
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.9e-134 482.6 408 60.0
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 5.4e-133 478.4 410 61.0
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 9.3e-133 477.6 403 61.5
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.3e-131 473.8 404 61.1
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 8.7e-131 471.1 408 59.3
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 8.2e-121 438.0 387 57.6
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.2e-116 424.1 426 53.5
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.8e-115 420.2 423 52.0
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.5e-111 407.1 432 52.1
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.6e-111 406.4 312 65.1
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.6e-108 397.1 298 63.8
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 4.3e-106 389.0 329 58.1
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.8e-105 386.3 436 49.5
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 4.8e-105 385.6 219 83.1
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.4e-104 384.0 393 53.2
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 4.5e-103 379.0 210 84.3
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 8.8e-99 364.8 299 64.2
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 4.1e-96 355.9 208 79.8
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.0e-95 353.6 248 66.9
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 3.3e-90 336.3 448 44.2
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.6e-84 317.4 214 67.3
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.5e-82 310.8 477 41.5
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 4.4e-82 309.3 214 64.5
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 7.5e-82 308.5 373 48.5
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.5e-77 293.5 238 56.7
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.2e-76 291.2 467 38.1
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 4.0e-75 286.2 222 59.5
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 3.0e-67 260.0 398 37.2
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-66 257.3 188 68.6
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.3e-65 254.6 433 40.6
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 6.4e-49 199.1 239 52.3
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-43 181.8 147 66.0
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 3.4e-42 176.8 189 53.4
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.7e-41 173.3 99 80.8
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.9e-40 171.0 130 70.8
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.9e-40 171.0 94 84.0
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.1e-40 169.1 94 83.0
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.6e-39 166.4 95 80.0
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 8.1e-36 155.6 110 70.0
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.4e-34 149.8 174 47.7
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 5.4e-32 142.9 152 50.0
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-28 131.7 133 51.9
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-28 131.7 133 51.9
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-28 131.7 133 51.9
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 2.0e-26 124.4 161 45.3
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.5e-23 113.6 136 47.1
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.3e-17 95.1 73 65.8
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 4.8e-12 76.6 44 79.5
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 6.0e-07 59.7 52 51.9


User provided reference genes

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