Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G158100 Prunus persica HOM05D002099 ORTHO05D002080 3.6e-39 164.5 84 100.0
MD11G1267400 Malus domestica HOM05D002099 ORTHO05D002080 4.6e-26 120.9 83 77.1
Dinv18388 Davidia involucrata HOM05D002099 ORTHO05D002080 2.0e-21 105.5 102 56.9
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 7.5e-21 103.6 96 59.4
Nitab4.5_0000347g0160 Nicotiana tabacum HOM05D002099 ORTHO05D002080 1.7e-20 102.4 95 57.9
Nitab4.5_0004191g0010 Nicotiana tabacum HOM05D002099 ORTHO05D002080 2.9e-20 101.7 95 57.9
Peaxi162Scf00111g01452 Petunia axillaris HOM05D002099 ORTHO05D002080 2.4e-19 98.6 99 55.6
FAN21G3358 Fragaria x ananassa HOM05D002099 ORTHO05D002080 5.4e-19 97.4 83 62.7
Rhsim06G0211000 Rhododendron simsii HOM05D002099 ORTHO05D002080 1.2e-18 96.3 104 49.0
Aqoxy4G00213 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 1.6e-18 95.9 101 50.5
PGSC0003DMG400007064 Solanum tuberosum HOM05D002099 ORTHO05D002080 2.1e-18 95.5 94 55.3
Cc05_g10880 Coffea canephora HOM05D002099 ORTHO05D002080 2.7e-18 95.1 103 52.4
DCAR_019606 Daucus carota HOM05D002099 ORTHO05D002080 2.7e-18 95.1 102 49.0
CAN.G375.41 Capsicum annuum HOM05D002099 ORTHO05D002080 4.6e-18 94.4 91 53.8
Solyc07g062230.4 Solanum lycopersicum HOM05D002099 ORTHO05D002080 4.6e-18 94.4 94 54.3
CSS0029955 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 7.8e-18 93.6 103 51.5
PSO170G6085 Papaver somniferum HOM05D002099 ORTHO05D002080 1.7e-17 92.4 100 54.0
Cpa.g.c47488 Carica papaya HOM05D002099 ORTHO05D002080 2.3e-17 92.0 100 53.0
Manes.03G091800 Manihot esculenta HOM05D002099 ORTHO05D002080 3.0e-17 91.7 104 49.0
Sopen07g030510 Solanum pennellii HOM05D002099 ORTHO05D002080 3.0e-17 91.7 86 57.0
PSO782G0530 Papaver somniferum HOM05D002099 ORTHO05D002080 3.9e-17 91.3 100 52.0
Cpa.g.sc77.45 Carica papaya HOM05D002099 ORTHO05D002080 5.1e-17 90.9 99 52.5
GSVIVG01021275001 Vitis vinifera HOM05D002099 ORTHO05D002080 6.6e-17 90.5 83 57.8
Lj1A826G60 Lonicera japonica HOM05D002099 ORTHO05D002080 8.6e-17 90.1 105 52.4
TWI39G0758 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 8.6e-17 90.1 92 53.3
Nn3g21047 Nelumbo nucifera HOM05D002099 ORTHO05D002080 1.9e-16 89.0 101 49.5
SGA_v2.0_scaffold130G34273 Striga asiatica HOM05D002099 ORTHO05D002080 1.9e-16 89.0 83 60.2
Actinidia12596 Actinidia chinensis HOM05D002099 ORTHO05D002080 2.5e-16 88.6 103 47.6
TAR626G1033 Trochodendron aralioides HOM05D002099 ORTHO05D002080 3.3e-16 88.2 101 48.5
Dinv32323 Davidia involucrata HOM05D002099 ORTHO05D002080 5.6e-16 87.4 101 47.5
Oeu010026.1 Olea europaea HOM05D002099 ORTHO05D002080 9.5e-16 86.7 103 45.6
TAR627G0673 Trochodendron aralioides HOM05D002099 ORTHO05D002080 9.5e-16 86.7 101 48.5
Glyma.15G087400 Glycine max HOM05D002099 ORTHO05D002080 1.2e-15 86.3 101 48.5
TAR629G0376 Trochodendron aralioides HOM05D002099 ORTHO05D002080 1.2e-15 86.3 100 47.0
Actinidia07658 Actinidia chinensis HOM05D002099 ORTHO05D002080 2.8e-15 85.1 93 48.4
FAN16G3110 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.8e-15 85.1 83 57.8
CSS0006478 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 4.7e-15 84.3 100 47.0
Glyma.05G162700 Glycine max HOM05D002099 ORTHO05D002080 6.2e-15 84.0 101 45.5
GSVIVG01014151001 Vitis vinifera HOM05D002099 ORTHO05D002080 6.2e-15 84.0 83 54.2
Phvul.006G170800 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 1.4e-14 82.8 101 44.6
FvH4_3g17960 Fragaria vesca HOM05D002099 ORTHO05D002080 1.8e-14 82.4 83 56.6
Actinidia39530 Actinidia chinensis HOM05D002099 ORTHO05D002080 4.0e-14 81.3 92 46.7
Thecc.06G163200 Theobroma cacao HOM05D002099 ORTHO05D002080 4.0e-14 81.3 101 45.5
Migut.M00702 Erythranthe guttata HOM05D002099 ORTHO05D002080 5.2e-14 80.9 87 48.3
Hma1.2p1_0050F.1_g028950 Hydrangea macrophylla HOM05D002099 ORTHO05D002080 5.2e-14 80.9 88 51.1
Hma1.2p1_1150F.1_g261800 Hydrangea macrophylla HOM05D002099 ORTHO05D002080 5.2e-14 80.9 101 47.5
Lj4g0025167 Lotus japonicus HOM05D002099 ORTHO05D002080 5.2e-14 80.9 101 44.6
vmacro10941 Vaccinium macrocarpon HOM05D002099 ORTHO05D002080 5.2e-14 80.9 101 43.6
Duzib160G0890 Durio zibethinus HOM05D002099 ORTHO05D002080 6.8e-14 80.5 101 44.6
Ciclev10014980m.g Citrus clementina HOM05D002099 ORTHO05D002080 1.2e-13 79.7 101 46.5
Duzib235G1340 Durio zibethinus HOM05D002099 ORTHO05D002080 1.2e-13 79.7 101 44.6
Rhsim02G0137700 Rhododendron simsii HOM05D002099 ORTHO05D002080 1.2e-13 79.7 100 45.0
Aqoxy1G01946 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 1.5e-13 79.3 100 47.0
MBI06_g16566_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 1.5e-13 79.3 101 42.6
TWI53G0885 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 2.0e-13 79.0 100 43.0
ATR0213G022 Amborella trichopoda HOM05D002099 ORTHO05D002080 2.6e-13 78.6 101 44.6
Medtr8g087730 Medicago truncatula HOM05D002099 ORTHO05D002080 2.6e-13 78.6 103 45.6
TPR.G6783 Trifolium pratense HOM05D002099 ORTHO05D002080 2.6e-13 78.6 103 44.7
Lalb_Chr15g0086491 Lupinus albus HOM05D002099 ORTHO05D002080 3.4e-13 78.2 101 43.6
Peaxi162Scf00112g01717 Petunia axillaris HOM05D002099 ORTHO05D002080 3.4e-13 78.2 98 42.9
Psat7g067320 Pisum sativum HOM05D002099 ORTHO05D002080 3.4e-13 78.2 102 45.1
FAN11G1503 Fragaria x ananassa HOM05D002099 ORTHO05D002080 5.8e-13 77.4 83 53.0
Oeu033707.1 Olea europaea HOM05D002099 ORTHO05D002080 5.8e-13 77.4 101 42.6
Psat1g193200 Pisum sativum HOM05D002099 ORTHO05D002080 7.6e-13 77.0 103 43.7
TPR.G4518 Trifolium pratense HOM05D002099 ORTHO05D002080 7.6e-13 77.0 101 43.6
VMungo0540G0417 Vigna mungo HOM05D002099 ORTHO05D002080 7.6e-13 77.0 101 42.6
Atru.chr10.1518 Acer truncatum HOM05D002099 ORTHO05D002080 9.9e-13 76.6 101 42.6
Os09g0534000 Oryza sativa ssp. japonica HOM05D002099 ORTHO05D002080 9.9e-13 76.6 83 49.4
Phvul.002G242400 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 9.9e-13 76.6 101 42.6
THA.LOC104820633 Tarenaya hassleriana HOM05D002099 ORTHO05D002080 9.9e-13 76.6 101 42.6
arahy.Tifrunner.gnm1.ann1.8WY03U Arachis hypogaea HOM05D002099 ORTHO05D002080 1.3e-12 76.3 105 41.0
MELO3C007187.2 Cucumis melo HOM05D002099 ORTHO05D002080 1.7e-12 75.9 100 44.0
Sabra11G0056600 Salix brachista HOM05D002099 ORTHO05D002080 1.7e-12 75.9 101 44.6
Sabra11G0060000 Salix brachista HOM05D002099 ORTHO05D002080 1.7e-12 75.9 101 44.6
BcaB07g32563 Brassica carinata HOM05D002099 ORTHO05D002080 2.2e-12 75.5 101 42.6
Ca_17883_v3 Cicer arietinum L. HOM05D002099 ORTHO05D002080 2.2e-12 75.5 102 42.2
Medtr2g017670 Medicago truncatula HOM05D002099 ORTHO05D002080 2.2e-12 75.5 102 42.2
Nitab4.5_0001778g0180 Nicotiana tabacum HOM05D002099 ORTHO05D002080 2.2e-12 75.5 101 40.6
Sed0019424 Sechium edule HOM05D002099 ORTHO05D002080 2.2e-12 75.5 100 43.0
CiPaw.09G136000 Carya illinoinensis HOM05D002099 ORTHO05D002080 3.8e-12 74.7 96 45.8
Gohir.A10G033300 Gossypium hirsutum HOM05D002099 ORTHO05D002080 3.8e-12 74.7 100 42.0
Lj2A316T70 Lonicera japonica HOM05D002099 ORTHO05D002080 3.8e-12 74.7 101 43.6
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.8e-12 74.7 101 40.6
Potri.011G072200 Populus trichocarpa HOM05D002099 ORTHO05D002080 3.8e-12 74.7 98 43.9
Cfa001095 Carpinus fangiana HOM05D002099 ORTHO05D002080 4.9e-12 74.3 96 44.8
ClCG01G024030 Citrullus lanatus HOM05D002099 ORTHO05D002080 4.9e-12 74.3 100 43.0
Cc02_g15900 Coffea canephora HOM05D002099 ORTHO05D002080 4.9e-12 74.3 101 39.6
Sed0024210 Sechium edule HOM05D002099 ORTHO05D002080 4.9e-12 74.3 100 43.0
Manes.16G044100 Manihot esculenta HOM05D002099 ORTHO05D002080 6.4e-12 73.9 96 41.7
Ciclev10024123m.g Citrus clementina HOM05D002099 ORTHO05D002080 8.4e-12 73.6 79 51.9
Haze_05404 Corylus avellana HOM05D002099 ORTHO05D002080 8.4e-12 73.6 96 43.8
DCAR_003969 Daucus carota HOM05D002099 ORTHO05D002080 8.4e-12 73.6 101 40.6
Gohir.D10G034000 Gossypium hirsutum HOM05D002099 ORTHO05D002080 8.4e-12 73.6 100 42.0
Gorai.011G035700 Gossypium raimondii HOM05D002099 ORTHO05D002080 8.4e-12 73.6 100 42.0
Solyc02g071900.3 Solanum lycopersicum HOM05D002099 ORTHO05D002080 8.4e-12 73.6 99 40.4
Sopen02g020890 Solanum pennellii HOM05D002099 ORTHO05D002080 8.4e-12 73.6 99 40.4
PGSC0003DMG400028410 Solanum tuberosum HOM05D002099 ORTHO05D002080 8.4e-12 73.6 99 40.4
arahy.Tifrunner.gnm1.ann1.68LYJE Arachis hypogaea HOM05D002099 ORTHO05D002080 1.1e-11 73.2 105 40.0
CAN.G411.28 Capsicum annuum HOM05D002099 ORTHO05D002080 1.1e-11 73.2 101 39.6
AL4G30350 Arabidopsis lyrata HOM05D002099 ORTHO05D002080 3.2e-11 71.6 96 41.7
VMungo0251G2043 Vigna mungo HOM05D002099 ORTHO05D002080 3.2e-11 71.6 101 39.6
Lalb_Chr12g0204881 Lupinus albus HOM05D002099 ORTHO05D002080 4.1e-11 71.2 102 39.2
Peaxi162Scf00854g00214 Petunia axillaris HOM05D002099 ORTHO05D002080 4.1e-11 71.2 101 40.6
PGR031G0337 Punica granatum HOM05D002099 ORTHO05D002080 4.1e-11 71.2 101 38.6
CsaV3_6G051160 Cucumis sativus L. HOM05D002099 ORTHO05D002080 5.4e-11 70.9 100 42.0
HanXRQChr17g0556941 Helianthus annuus HOM05D002099 ORTHO05D002080 5.4e-11 70.9 91 41.8
AT1G29760 Arabidopsis thaliana HOM05D002099 ORTHO05D002080 7.1e-11 70.5 101 37.6
AT2G34380 Arabidopsis thaliana HOM05D002099 ORTHO05D002080 7.1e-11 70.5 96 40.6
Gohir.A06G198600 Gossypium hirsutum HOM05D002099 ORTHO05D002080 7.1e-11 70.5 102 39.2
vmacro11962 Vaccinium macrocarpon HOM05D002099 ORTHO05D002080 7.1e-11 70.5 78 50.0
Sc17g0005550 Simmondsia chinensis HOM05D002099 ORTHO05D002080 9.2e-11 70.1 96 40.6
AL1G43590 Arabidopsis lyrata HOM05D002099 ORTHO05D002080 1.2e-10 69.7 101 37.6
BcaC01g00134 Brassica carinata HOM05D002099 ORTHO05D002080 1.2e-10 69.7 96 39.6
A09p36690 Brassica napus HOM05D002099 ORTHO05D002080 1.2e-10 69.7 101 40.6
C03p76160 Brassica napus HOM05D002099 ORTHO05D002080 1.2e-10 69.7 96 39.6
BolC3t19872H Brassica oleracea HOM05D002099 ORTHO05D002080 1.2e-10 69.7 96 39.6
SGA_v2.0_scaffold106G30609 Striga asiatica HOM05D002099 ORTHO05D002080 1.2e-10 69.7 101 39.6
EL10Ac3g05623 Beta vulgaris HOM05D002099 ORTHO05D002080 1.6e-10 69.3 99 42.4
Carub.0004s1605 Capsella rubella HOM05D002099 ORTHO05D002080 1.6e-10 69.3 96 39.6
Eucgr.D00420 Eucalyptus grandis HOM05D002099 ORTHO05D002080 1.6e-10 69.3 102 39.2
Gorai.010G240300 Gossypium raimondii HOM05D002099 ORTHO05D002080 1.6e-10 69.3 96 40.6
Aa31LG6G5860 Aethionema arabicum HOM05D002099 ORTHO05D002080 2.1e-10 68.9 101 39.6
C04p63730 Brassica napus HOM05D002099 ORTHO05D002080 2.1e-10 68.9 83 43.4
BraA09t39188Z Brassica rapa HOM05D002099 ORTHO05D002080 2.1e-10 68.9 83 45.8
Lsat_1_v5_gn_1_112181 Lactuca sativa HOM05D002099 ORTHO05D002080 2.1e-10 68.9 100 39.0
CDE02G2274 Ceratophyllum demersum HOM05D002099 ORTHO05D002080 2.7e-10 68.6 100 39.0
Migut.H01402 Erythranthe guttata HOM05D002099 ORTHO05D002080 2.7e-10 68.6 101 37.6
HanXRQChr11g0343811 Helianthus annuus HOM05D002099 ORTHO05D002080 2.7e-10 68.6 99 41.4
SalBow7G4550 Salvia bowleyana HOM05D002099 ORTHO05D002080 2.7e-10 68.6 102 37.3
BcaB06g28760 Brassica carinata HOM05D002099 ORTHO05D002080 3.5e-10 68.2 83 43.4
arahy.Tifrunner.gnm1.ann1.UFQ84G Arachis hypogaea HOM05D002099 ORTHO05D002080 4.6e-10 67.8 101 39.6
MD00G1007100 Malus domestica HOM05D002099 ORTHO05D002080 4.6e-10 67.8 102 40.2
RcHm_v2.0_Chr5g0012061 Rosa chinensis HOM05D002099 ORTHO05D002080 4.6e-10 67.8 101 39.6
SalBow7G2784 Salvia bowleyana HOM05D002099 ORTHO05D002080 4.6e-10 67.8 102 37.3
Sp4g16650 Schrenkiella parvula HOM05D002099 ORTHO05D002080 4.6e-10 67.8 96 39.6
Hund21456 Selenicereus undatus HOM05D002099 ORTHO05D002080 4.6e-10 67.8 93 44.1
ECA236G4752 Erigeron canadensis HOM05D002099 ORTHO05D002080 6.0e-10 67.4 96 36.5
FAN05G1516 Fragaria x ananassa HOM05D002099 ORTHO05D002080 6.0e-10 67.4 101 39.6
FAN16G0395 Fragaria x ananassa HOM05D002099 ORTHO05D002080 6.0e-10 67.4 101 39.6
Lalb_Chr13g0295371 Lupinus albus HOM05D002099 ORTHO05D002080 6.0e-10 67.4 99 38.4
Manes.05G011866 Manihot esculenta HOM05D002099 ORTHO05D002080 6.0e-10 67.4 91 40.7
arahy.Tifrunner.gnm1.ann1.NR0K7A Arachis hypogaea HOM05D002099 ORTHO05D002080 7.8e-10 67.0 100 40.0
A04p26330 Brassica napus HOM05D002099 ORTHO05D002080 7.8e-10 67.0 83 43.4
BraA04t18136Z Brassica rapa HOM05D002099 ORTHO05D002080 7.8e-10 67.0 83 43.4
ECA248G3894 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.8e-10 67.0 101 39.6
FAN21G2634 Fragaria x ananassa HOM05D002099 ORTHO05D002080 7.8e-10 67.0 101 38.6
Lsat_1_v5_gn_4_49340 Lactuca sativa HOM05D002099 ORTHO05D002080 7.8e-10 67.0 100 39.0
BcaB06g28762 Brassica carinata HOM05D002099 ORTHO05D002080 1.0e-09 66.6 83 39.8
BcaC05g26991 Brassica carinata HOM05D002099 ORTHO05D002080 1.0e-09 66.6 101 38.6
C05p28510 Brassica napus HOM05D002099 ORTHO05D002080 1.0e-09 66.6 101 38.6
BolC5t31575H Brassica oleracea HOM05D002099 ORTHO05D002080 1.0e-09 66.6 101 38.6
CARHR029130 Cardamine hirsuta HOM05D002099 ORTHO05D002080 1.0e-09 66.6 101 36.6
Oeu039867.2 Olea europaea HOM05D002099 ORTHO05D002080 1.0e-09 66.6 101 37.6
Potri.003G025975 Populus trichocarpa HOM05D002099 ORTHO05D002080 1.0e-09 66.6 51 62.7
Prupe.4G068800 Prunus persica HOM05D002099 ORTHO05D002080 1.0e-09 66.6 101 38.6
Sp1g25650 Schrenkiella parvula HOM05D002099 ORTHO05D002080 1.0e-09 66.6 101 36.6
HPP92_025851 Vanilla planifolia HOM05D002099 ORTHO05D002080 1.0e-09 66.6 97 39.2
A08p24870 Brassica napus HOM05D002099 ORTHO05D002080 1.3e-09 66.2 96 38.5
BraA08t34442Z Brassica rapa HOM05D002099 ORTHO05D002080 1.3e-09 66.2 96 38.5
Carub.0001s2800 Capsella rubella HOM05D002099 ORTHO05D002080 1.3e-09 66.2 101 36.6
BolC4t27840H Brassica oleracea HOM05D002099 ORTHO05D002080 1.7e-09 65.9 83 39.8
FAN02G1903 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.3e-09 65.5 101 38.6
THA.LOC104812310 Tarenaya hassleriana HOM05D002099 ORTHO05D002080 2.3e-09 65.5 83 44.6
HanXRQChr16g0498641 Helianthus annuus HOM05D002099 ORTHO05D002080 3.0e-09 65.1 100 35.0
Lsat_1_v5_gn_7_25220 Lactuca sativa HOM05D002099 ORTHO05D002080 3.0e-09 65.1 99 38.4
HanXRQChr04g0116231 Helianthus annuus HOM05D002099 ORTHO05D002080 3.9e-09 64.7 100 36.0
FvH4_6g08010 Fragaria vesca HOM05D002099 ORTHO05D002080 5.1e-09 64.3 101 37.6
FAN14G1923 Fragaria x ananassa HOM05D002099 ORTHO05D002080 5.1e-09 64.3 101 37.6
ECA234G2299 Erigeron canadensis HOM05D002099 ORTHO05D002080 6.6e-09 63.9 100 40.0
FvH4_3g07070 Fragaria vesca HOM05D002099 ORTHO05D002080 6.6e-09 63.9 101 36.6
QL05p050338 Quercus lobata HOM05D002099 ORTHO05D002080 8.7e-09 63.5 96 40.6
CANSAT64G1043 Cannabis sativa HOM05D002099 ORTHO05D002080 1.1e-08 63.2 100 37.0
Thhalv10007317m.g Eutrema salsugineum HOM05D002099 ORTHO05D002080 1.1e-08 63.2 101 35.6
BcaB03g12176 Brassica carinata HOM05D002099 ORTHO05D002080 1.5e-08 62.8 101 35.6
FAN11G3654 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.5e-08 62.0 101 35.6
FAN21G0997 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.8e-07 58.5 85 38.8
CARHR128460 Cardamine hirsuta HOM05D002099 ORTHO05D002080 4.7e-07 57.8 93 33.3
Dinv15012 Davidia involucrata HOM05D002099 ORTHO05D002080 9.0e-06 53.5 39 64.1


User provided reference genes

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