Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 7.6e-170 600.5 323 100.0
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 3.8e-137 491.9 330 83.3
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.8e-129 465.3 329 80.9
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 3.8e-129 465.3 290 87.2
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 3.8e-129 465.3 322 82.0
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 4.2e-128 461.8 328 80.2
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.5e-128 461.5 330 80.0
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 7.9e-127 457.6 332 79.5
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 2.4e-123 446.0 317 75.7
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 1.5e-117 426.8 311 76.2
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 2.0e-117 426.4 317 74.1
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.0e-117 426.4 320 75.3
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 4.4e-117 425.2 329 72.6
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 4.4e-117 425.2 325 73.5
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 5.7e-117 424.9 326 73.9
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 6.3e-116 421.4 320 72.5
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 6.3e-116 421.4 323 72.4
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 1.8e-115 419.9 324 72.8
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.4e-115 419.5 313 72.5
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 4.1e-115 418.7 271 80.4
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 6.9e-115 417.9 316 72.5
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 2.6e-114 416.0 304 75.0
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 3.4e-114 415.6 323 71.2
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 4.5e-114 415.2 318 72.0
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.5e-114 415.2 312 73.7
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 4.5e-114 415.2 329 70.2
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.0e-113 414.1 274 78.1
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 2.9e-113 412.5 325 70.5
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 6.5e-113 411.4 301 74.8
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 8.5e-113 411.0 318 71.7
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.1e-112 410.6 274 78.1
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 1.9e-112 409.8 273 78.8
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 3.2e-112 409.1 306 71.9
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 7.2e-112 407.9 314 71.0
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 9.4e-112 407.5 323 69.3
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 9.4e-112 407.5 324 69.4
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 1.2e-111 407.1 261 80.8
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 3.6e-111 405.6 317 70.0
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 7.9e-111 404.4 307 71.0
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 2.3e-110 402.9 272 76.1
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 3.0e-110 402.5 314 69.1
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 3.9e-110 402.1 259 79.9
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 3.9e-110 402.1 284 75.4
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 6.7e-110 401.4 277 76.9
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 6.7e-110 401.4 314 70.4
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 6.7e-110 401.4 344 65.7
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 8.8e-110 401.0 303 73.3
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 8.8e-110 401.0 259 79.9
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 8.8e-110 401.0 317 69.7
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.3e-109 399.1 283 73.5
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 5.7e-109 398.3 271 76.4
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 9.7e-109 397.5 290 73.4
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 9.7e-109 397.5 265 77.4
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 1.3e-108 397.1 265 79.6
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.3e-108 397.1 323 66.9
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 3.7e-108 395.6 273 75.5
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 4.8e-108 395.2 303 69.6
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 6.3e-108 394.8 327 67.6
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 8.2e-108 394.4 314 69.4
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.1e-107 394.0 328 68.0
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.4e-107 393.7 252 80.2
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 2.4e-107 392.9 263 78.3
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 2.4e-107 392.9 259 78.0
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 4.1e-107 392.1 266 74.8
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 4.1e-107 392.1 355 61.4
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 7.0e-107 391.3 330 67.0
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 9.1e-107 391.0 266 74.4
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 9.1e-107 391.0 266 74.8
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.6e-106 390.2 257 79.4
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 3.5e-106 389.0 266 74.4
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.5e-106 389.0 266 77.1
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 3.5e-106 389.0 309 70.2
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 4.5e-106 388.7 266 74.1
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.9e-105 386.0 266 73.3
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 2.9e-105 386.0 320 66.6
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 3.8e-105 385.6 266 74.1
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 3.8e-105 385.6 266 74.1
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.1e-104 384.0 305 69.5
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 1.5e-104 383.6 291 72.2
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.5e-104 383.6 266 72.9
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.9e-104 383.3 266 72.9
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.6e-103 380.2 266 75.2
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 2.7e-103 379.4 259 75.3
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 4.7e-103 378.6 266 72.2
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 4.7e-103 378.6 386 58.8
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 8.0e-103 377.9 266 73.7
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 1.8e-102 376.7 276 70.7
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 2.3e-102 376.3 299 70.6
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.0e-101 373.2 271 73.8
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 4.4e-101 372.1 264 72.3
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 5.7e-101 371.7 379 58.6
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 5.0e-97 358.6 238 80.3
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 5.0e-97 358.6 238 80.3
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 4.2e-96 355.5 309 62.5
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 3.6e-95 352.4 302 65.6
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 5.2e-94 348.6 317 60.3
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 1.4e-91 340.5 425 49.2
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.8e-91 340.1 256 67.6
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 3.1e-91 339.3 248 70.2
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.7e-90 336.3 298 62.8
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 1.1e-88 330.9 270 73.0
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.7e-84 317.0 256 71.1
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.7e-84 315.8 218 77.5
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 6.6e-81 305.1 201 81.6
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 2.5e-80 303.1 246 70.7
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 9.5e-80 301.2 251 60.2
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.8e-78 297.0 225 71.6
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 9.8e-77 291.2 181 81.8
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.3e-76 290.8 255 60.0
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.9e-76 289.7 260 57.7
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 4.9e-76 288.9 268 60.8
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 1.9e-72 276.9 299 55.2
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 9.5e-72 274.6 256 56.2
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.6e-71 273.9 266 52.6
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.6e-69 266.5 240 57.5
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 8.3e-60 235.0 179 69.8
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 7.3e-56 221.9 176 68.8
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 2.1e-55 220.3 242 52.1
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 3.6e-55 219.5 217 58.5
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.3e-52 211.1 175 64.0
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 6.4e-52 208.8 277 46.9
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 6.4e-52 208.8 298 43.6
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 3.6e-47 193.0 182 61.0
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 2.9e-44 183.3 293 40.6
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 7.1e-27 125.6 136 58.1
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 3.5e-26 123.2 87 73.6
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 2.8e-23 113.6 151 51.0
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 2.9e-20 103.6 84 64.3
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 3.3e-16 90.1 57 84.2
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 9.7e-16 88.6 53 88.7
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.8e-14 84.3 63 63.5
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 4.6e-10 69.7 48 64.6
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 3.3e-08 63.5 48 58.3
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 3.3e-08 63.5 94 41.5
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 3.7e-07 60.1 42 71.4
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.1e-06 58.5 87 43.7
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 3.1e-06 57.0 210 29.0


User provided reference genes

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