Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.2e-156 556.6 306 100.0
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 6.8e-136 487.6 304 88.2
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.3e-134 483.4 307 87.0
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.7e-131 473.0 306 84.6
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 5.5e-130 468.0 307 82.7
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 4.7e-129 464.9 304 84.9
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 8.9e-128 460.7 305 83.3
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.2e-127 460.3 306 85.3
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.2e-127 460.3 307 74.9
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 4.9e-126 454.9 304 83.6
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 8.3e-126 454.1 306 82.7
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.1e-125 453.8 307 82.1
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.8e-125 453.0 307 74.9
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 3.1e-125 452.2 313 74.1
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 4.1e-125 451.8 306 81.4
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.9e-124 448.0 309 82.2
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 5.9e-124 448.0 300 75.7
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 3.8e-123 445.3 307 81.4
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 6.6e-123 444.5 307 76.5
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.1e-122 443.7 307 81.1
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.1e-122 443.7 306 78.1
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.5e-122 440.7 320 77.2
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 6.1e-121 438.0 315 71.4
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 8.0e-121 437.6 309 71.2
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 8.0e-121 437.6 309 79.0
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 8.0e-121 437.6 308 80.5
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.3e-120 436.0 304 80.3
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 6.8e-120 434.5 307 81.1
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.0e-119 433.0 309 81.6
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 5.8e-119 431.4 304 77.0
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 7.5e-119 431.0 307 77.2
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 7.5e-119 431.0 307 79.8
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.3e-118 430.3 307 79.2
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.3e-118 430.3 306 80.7
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.2e-118 429.5 306 77.1
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 3.2e-117 425.6 304 78.3
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 4.1e-117 425.2 311 71.4
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 5.4e-117 424.9 311 77.8
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 7.0e-117 424.5 305 80.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 9.2e-117 424.1 305 72.8
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 1.2e-116 423.7 310 71.9
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.6e-116 423.3 319 74.9
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.0e-116 422.9 310 71.9
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 2.0e-116 422.9 310 72.6
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 4.6e-116 421.8 307 77.2
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 2.3e-115 419.5 285 83.5
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 3.0e-115 419.1 310 71.3
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 3.9e-115 418.7 307 79.2
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 5.0e-115 418.3 306 77.5
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 5.0e-115 418.3 305 70.5
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 6.6e-115 417.9 310 71.6
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 8.6e-115 417.5 310 76.8
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 8.6e-115 417.5 305 79.0
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.5e-114 416.8 308 73.7
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.9e-114 416.4 317 74.1
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.9e-114 416.4 323 74.6
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 5.6e-114 414.8 313 77.0
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.2e-113 413.7 309 68.9
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.6e-113 412.1 308 74.0
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.8e-112 409.8 305 68.9
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 8.9e-112 407.5 309 68.3
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.2e-111 407.1 306 76.1
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.5e-111 406.8 342 63.5
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 2.0e-111 406.4 309 67.6
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.0e-111 406.4 309 68.6
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.0e-111 406.4 317 73.8
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.6e-111 406.0 311 67.5
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.7e-110 402.1 307 75.2
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.9e-110 401.7 309 67.6
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 6.4e-110 401.4 309 74.8
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.1e-109 400.6 312 69.2
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.4e-109 400.2 310 77.1
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.9e-109 399.8 306 76.5
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 9.2e-109 397.5 313 73.2
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.6e-108 396.7 319 72.7
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 3.0e-107 392.5 307 73.3
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 2.5e-106 389.4 308 66.2
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 7.3e-106 387.9 306 68.6
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.6e-105 386.7 320 70.9
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.1e-105 386.3 318 69.2
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 6.2e-105 384.8 309 65.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 6.2e-105 384.8 309 72.2
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.1e-104 384.0 290 77.9
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 3.1e-104 382.5 307 66.1
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 3.1e-104 382.5 338 68.6
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 5.2e-104 381.7 311 73.0
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.2e-103 380.6 307 74.3
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 2.6e-103 379.4 279 77.8
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 5.8e-103 378.3 356 63.5
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 5.8e-103 378.3 356 63.5
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.3e-102 377.1 281 78.3
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.9e-101 373.2 264 79.2
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.2e-100 370.5 273 76.6
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.5e-98 363.6 311 72.0
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.5e-98 363.6 338 56.5
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.6e-97 360.1 258 72.5
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.1e-97 359.8 285 75.8
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.8e-96 356.7 308 59.7
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.4e-96 356.3 262 79.8
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 5.2e-96 355.1 350 63.7
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 5.2e-96 355.1 350 63.7
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 5.2e-96 355.1 241 87.1
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.3e-94 350.5 263 68.8
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 8.4e-94 347.8 306 60.8
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 5.4e-93 345.1 256 79.7
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.2e-92 344.0 255 78.0
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 3.9e-91 339.0 309 60.2
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.1e-89 333.2 271 64.9
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 4.4e-87 325.5 213 87.3
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 2.4e-85 319.7 218 83.9
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.1e-81 306.6 232 68.1
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 4.8e-81 305.4 249 65.1
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.4e-80 303.1 232 68.1
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-79 300.8 297 56.2
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 2.2e-78 296.6 235 78.3
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 6.4e-78 295.0 232 75.4
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.1e-77 294.3 232 75.4
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 7.1e-77 291.6 297 56.9
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.1e-74 284.3 237 62.0
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.1e-72 277.7 243 69.1
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.5e-71 273.9 245 72.2
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.8e-70 269.2 230 70.9
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.2e-68 264.2 240 71.7
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.7e-68 263.1 232 71.6
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 6.0e-68 261.9 189 83.1
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 6.0e-68 261.9 214 76.2
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.1e-65 253.4 232 69.8
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.3e-62 244.2 140 82.1
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 2.5e-58 229.9 242 56.6
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-56 224.2 234 56.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.4e-56 224.2 234 56.8
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 6.9e-56 221.9 295 46.1
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.1e-48 198.0 146 84.9
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.4e-48 197.6 244 58.2
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.4e-47 193.0 325 45.2
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 7.7e-47 191.8 298 39.6
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 4.2e-45 186.0 162 64.8
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 6.1e-44 182.2 149 81.9
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.0e-43 181.4 172 57.0
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 3.9e-43 179.5 234 54.7
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.4e-40 171.0 326 35.6
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.8e-40 170.6 243 43.6
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.2e-35 152.5 166 51.2
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.7e-35 152.1 74 87.8
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 7.4e-34 148.7 156 69.9
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 6.5e-30 135.6 73 78.1
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 9.4e-29 131.7 73 83.6
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.4e-26 123.2 93 66.7
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 3.8e-22 109.8 103 52.4
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 5.5e-21 105.9 148 42.6
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 2.2e-17 94.0 132 34.8
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.2e-17 94.0 50 76.0
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 6.3e-17 92.4 131 42.7
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 3.1e-16 90.1 72 72.2
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.1e-13 81.6 85 55.3
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.7e-09 67.8 46 69.6
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 3.7e-09 66.6 44 72.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 7.0e-08 62.4 100 37.0


User provided reference genes

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