Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 3.4e-90 335.1 186 100.0
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 6.0e-71 271.2 186 79.0
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 2.9e-65 252.3 171 74.9
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 2.5e-61 239.2 188 67.6
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.3e-60 236.9 189 67.7
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.4e-59 232.6 189 66.7
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 2.0e-58 229.6 189 66.7
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.0e-58 229.6 189 66.7
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 1.4e-43 180.3 187 53.5
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 2.6e-42 176.0 187 53.5
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 2.9e-41 172.6 187 56.7
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 6.5e-41 171.4 187 52.9
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 8.5e-41 171.0 187 51.9
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 9.4e-40 167.5 192 52.6
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 9.4e-40 167.5 192 53.6
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 1.2e-39 167.2 195 50.8
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 1.6e-39 166.8 196 52.0
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 2.1e-39 166.4 189 53.4
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 2.7e-39 166.0 192 52.1
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 4.7e-39 165.2 194 53.6
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 6.1e-39 164.9 192 51.6
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 1.0e-38 164.1 172 52.3
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 8.8e-38 161.0 191 50.8
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 2.6e-37 159.5 212 47.6
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 2.6e-37 159.5 189 49.2
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 4.4e-37 158.7 188 48.9
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 9.7e-37 157.5 195 49.2
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 8.3e-36 154.5 187 52.4
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 8.3e-36 154.5 190 47.9
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 1.8e-35 153.3 196 48.5
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 3.1e-35 152.5 217 45.2
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 4.5e-34 148.7 162 52.5
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 5.9e-34 148.3 165 52.1
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 1.3e-33 147.1 189 47.1
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 3.8e-33 145.6 186 46.8
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 3.8e-33 145.6 192 50.0
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 6.5e-33 144.8 189 47.6
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 1.1e-32 144.1 207 44.0
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 1.1e-32 144.1 195 50.8
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 1.5e-32 143.7 201 49.3
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 1.9e-32 143.3 210 49.5
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 2.5e-32 142.9 161 51.6
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 3.2e-32 142.5 189 47.1
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 1.2e-31 140.6 168 45.2
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 1.2e-31 140.6 184 45.1
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 4.7e-31 138.7 198 44.9
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 3.0e-30 136.0 215 41.9
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 5.2e-30 135.2 191 46.6
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 5.2e-30 135.2 188 44.1
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 5.2e-30 135.2 186 44.6
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 6.8e-30 134.8 186 43.5
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 1.2e-29 134.0 186 44.6
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 2.0e-29 133.3 188 51.1
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 2.6e-29 132.9 186 44.1
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 2.6e-29 132.9 208 44.2
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 3.4e-29 132.5 178 44.9
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 3.4e-29 132.5 186 44.1
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 3.4e-29 132.5 186 44.1
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 3.4e-29 132.5 186 43.5
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 9.8e-29 131.0 186 45.2
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 9.8e-29 131.0 207 41.5
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 1.7e-28 130.2 186 44.1
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 1.7e-28 130.2 206 42.7
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 2.8e-28 129.4 186 44.1
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 7.0e-27 124.8 189 42.9
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 2.7e-26 122.9 190 41.1
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 5.9e-26 121.7 167 43.1
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 1.1e-24 117.5 186 38.2
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 4.2e-24 115.5 159 43.4
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 7.2e-24 114.8 162 44.4
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 2.8e-23 112.8 221 46.6
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 6.1e-23 111.7 218 44.5
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 8.0e-23 111.3 175 41.7
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 8.0e-23 111.3 158 40.5
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 8.0e-23 111.3 217 45.6
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.0e-22 110.9 144 42.4
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 1.0e-22 110.9 167 40.1
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 1.8e-22 110.2 158 42.4
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 2.3e-22 109.8 179 41.9
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 2.3e-22 109.8 191 42.4
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 3.0e-22 109.4 160 43.1
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 6.8e-22 108.2 167 39.5
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 1.2e-21 107.5 171 39.8
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 2.6e-21 106.3 159 41.5
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 4.4e-21 105.5 161 41.6
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 7.0e-19 98.2 160 40.6
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 2.7e-18 96.3 112 53.6
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.0e-17 94.4 165 37.6
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 2.3e-17 93.2 190 46.8
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 3.9e-17 92.4 134 44.8
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.9e-16 90.1 163 41.1
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 2.1e-15 86.7 94 47.9
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 2.3e-14 83.2 101 41.6
Lalb_Chr03g0031351 Lupinus albus HOM05D007501 ORTHO05D009528 7.5e-13 78.2 160 42.5
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 6.4e-12 75.1 57 56.1
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 8.3e-12 74.7 58 63.8
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 1.2e-10 70.9 71 56.3
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 2.5e-08 63.2 102 37.3
Zm00001eb100670 Zea mays HOM05D007501 ORTHO05D009528 2.5e-08 63.2 32 71.9
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 4.3e-08 62.4 31 83.9
SEGI_16996 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 1.4e-06 57.4 34 70.6
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 4.0e-06 55.8 52 51.9
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 8.9e-06 54.7 55 41.8


User provided reference genes

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