Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G151600 Prunus persica HOM05D008142 ORTHO05D009674 2.3e-99 365.5 181 100.0
MD03G1255500 Malus domestica HOM05D008142 ORTHO05D009674 7.7e-47 191.0 196 60.7
FAN21G3515 Fragaria x ananassa HOM05D008142 ORTHO05D009674 6.1e-36 154.8 190 52.6
FvH4_3g16940 Fragaria vesca HOM05D008142 ORTHO05D009674 6.8e-35 151.4 171 53.8
FAN11G1471 Fragaria x ananassa HOM05D008142 ORTHO05D009674 6.8e-35 151.4 171 53.8
RcHm_v2.0_Chr5g0028181 Rosa chinensis HOM05D008142 ORTHO05D009674 1.5e-34 150.2 190 51.6
FAN16G2943 Fragaria x ananassa HOM05D008142 ORTHO05D009674 2.6e-34 149.4 171 53.2
QL04p069987 Quercus lobata HOM05D008142 ORTHO05D009674 8.3e-25 117.9 158 49.4
QL04p069966 Quercus lobata HOM05D008142 ORTHO05D009674 1.2e-20 104.0 155 48.4
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 8.9e-19 97.8 172 42.4
Cfa019469 Carpinus fangiana HOM05D008142 ORTHO05D009674 4.1e-16 89.0 170 42.4
Haze_08481 Corylus avellana HOM05D008142 ORTHO05D009674 7.1e-16 88.2 170 42.4
Nn4g26546 Nelumbo nucifera HOM05D008142 ORTHO05D009674 7.1e-16 88.2 179 39.1
RhsimUnG0205300 Rhododendron simsii HOM05D008142 ORTHO05D009674 2.7e-15 86.3 182 40.1
CSS0003990 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 4.6e-15 85.5 195 40.5
Nn3g20734 Nelumbo nucifera HOM05D008142 ORTHO05D009674 1.0e-14 84.3 164 41.5
Actinidia35170 Actinidia chinensis HOM05D008142 ORTHO05D009674 3.9e-14 82.4 164 40.2
Actinidia18850 Actinidia chinensis HOM05D008142 ORTHO05D009674 8.6e-14 81.3 161 40.4
Dinv26679 Davidia involucrata HOM05D008142 ORTHO05D009674 1.9e-13 80.1 161 41.0
CSS0017983 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 3.3e-13 79.3 195 39.5
Hma1.2p1_0280F.1_g112890 Hydrangea macrophylla HOM05D008142 ORTHO05D009674 7.3e-13 78.2 188 38.3
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 1.2e-12 77.4 185 36.8
Eucgr.F03213 Eucalyptus grandis HOM05D008142 ORTHO05D009674 1.6e-12 77.0 161 41.0
CSS0032813 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 8.1e-12 74.7 183 39.9
Thecc.07G144400 Theobroma cacao HOM05D008142 ORTHO05D009674 6.8e-11 71.6 149 34.9
TAR627G0365 Trochodendron aralioides HOM05D008142 ORTHO05D009674 9.9e-10 67.8 167 35.9
TAR629G2490 Trochodendron aralioides HOM05D008142 ORTHO05D009674 1.3e-09 67.4 153 37.9
Lj3g0014819 Lotus japonicus HOM05D012055 ORTHO05D014183 2.4e-08 63.2 159 32.7
Ciclev10022628m.g Citrus clementina HOM05D008142 ORTHO05D009674 4.2e-08 62.4 164 33.5
DCAR_021049 Daucus carota HOM05D008142 ORTHO05D009674 4.2e-08 62.4 160 35.0
Aqoxy1G01717 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 5.4e-08 62.0 177 32.8
MBI10_g02220_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 1.2e-07 60.8 141 39.7
Thecc.07G144200 Theobroma cacao HOM05D008142 ORTHO05D009674 2.7e-07 59.7 151 35.1
Potri.001G379400 Populus trichocarpa HOM05D008142 ORTHO05D009674 4.6e-07 58.9 175 35.4
TAR627G0610 Trochodendron aralioides HOM05D008142 ORTHO05D009674 4.6e-07 58.9 118 36.4
DCAR_013786 Daucus carota HOM05D019704 ORTHO05D009674 6.0e-07 58.5 169 32.0
MBI07_g26359_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 1.3e-06 57.4 144 34.0
Nitab4.5_0004038g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 1.7e-06 57.0 180 33.3
Gohir.A01G042900 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.3e-06 56.6 156 32.7
Gorai.002G040600 Gossypium raimondii HOM05D008142 ORTHO05D009674 2.3e-06 56.6 151 33.1
PGSC0003DMG400007050 Solanum tuberosum HOM05D011950 ORTHO05D009674 3.0e-06 56.2 177 32.8
Gohir.D01G033700 Gossypium hirsutum HOM05D008142 ORTHO05D009674 3.9e-06 55.8 176 31.8
Prupe.4G151500 Prunus persica HOM05D015893 ORTHO05D019166 3.9e-06 55.8 190 29.5
A05p34870 Brassica napus HOM05D010899 ORTHO05D012947 5.1e-06 55.5 167 32.9
BolC5t33951H Brassica oleracea HOM05D010899 ORTHO05D012947 5.1e-06 55.5 166 31.9
BraA05t22299Z Brassica rapa HOM05D010899 ORTHO05D012947 5.1e-06 55.5 167 32.9
BcaC05g29061 Brassica carinata HOM05D010899 ORTHO05D012947 6.6e-06 55.1 166 31.9
C05p52720 Brassica napus HOM05D010899 ORTHO05D012947 6.6e-06 55.1 166 31.9
Gohir.A01G043000 Gossypium hirsutum HOM05D008142 ORTHO05D009674 6.6e-06 55.1 182 29.1
Gorai.002G040900 Gossypium raimondii HOM05D008142 ORTHO05D009674 8.7e-06 54.7 167 32.3
MD11G1276300 Malus domestica HOM05D015893 ORTHO05D019166 8.7e-06 54.7 175 29.7
TPR.G26609 Trifolium pratense HOM05D010689 ORTHO05D012855 8.7e-06 54.7 144 31.2


User provided reference genes

Program Settings