Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 4.4e-256 887.5 458 100.0
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 4.0e-217 758.1 429 90.4
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.5e-190 669.1 383 89.3
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 6.5e-183 644.4 460 73.5
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 5.5e-182 641.3 456 73.7
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 7.2e-182 641.0 456 74.6
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 8.7e-180 634.0 463 73.4
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.3e-178 630.2 456 73.5
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.8e-178 628.2 459 72.3
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.4e-177 626.7 456 73.0
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.8e-177 626.3 458 71.4
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 2.4e-177 625.9 475 70.7
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.6e-176 622.5 456 72.4
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.7e-175 619.8 455 72.1
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 5.0e-175 618.2 463 71.7
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.1e-174 617.1 462 71.2
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.2e-174 615.5 432 75.5
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 7.2e-174 614.4 457 72.9
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.1e-173 612.8 459 71.2
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.0e-172 610.5 456 71.3
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.4e-171 604.4 472 69.5
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.4e-169 600.1 477 68.1
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.8e-169 599.7 474 68.8
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 2.4e-169 599.4 455 70.5
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 5.3e-169 598.2 446 71.5
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.6e-168 595.9 459 70.4
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.4e-166 590.1 443 70.7
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.9e-166 589.7 441 71.2
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.2e-166 588.6 443 70.9
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 5.5e-166 588.2 459 68.8
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 6.7e-164 581.3 459 68.4
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.5e-163 580.1 447 69.1
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 2.0e-163 579.7 455 69.2
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.6e-163 579.3 457 67.8
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.3e-163 578.9 479 66.4
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 7.4e-163 577.8 457 67.6
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 4.8e-162 575.1 469 67.2
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.4e-161 573.5 454 69.2
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.6e-160 570.1 468 66.2
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.6e-160 569.3 431 71.0
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 4.5e-160 568.5 456 67.8
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 7.7e-160 567.8 456 64.5
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.0e-159 567.4 418 70.1
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 2.2e-159 566.2 456 67.3
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.8e-159 565.5 414 72.5
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 6.5e-159 564.7 456 66.9
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.2e-157 560.5 430 68.6
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 3.6e-157 558.9 458 63.8
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 6.1e-157 558.1 425 69.2
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 3.0e-156 555.8 442 67.6
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.0e-155 553.1 415 69.4
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 3.3e-155 552.4 429 65.7
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 9.7e-155 550.8 474 61.6
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 9.7e-155 550.8 435 69.7
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.3e-154 550.4 435 67.6
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 4.8e-154 548.5 455 65.3
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.1e-153 547.4 421 69.6
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 9.1e-153 544.3 460 63.7
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-152 543.5 459 63.8
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.6e-152 543.5 456 65.6
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 5.9e-152 541.6 461 63.1
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.0e-151 540.8 459 64.3
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 2.9e-151 539.3 432 67.4
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 5.0e-151 538.5 463 61.6
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.5e-151 538.1 434 66.1
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 8.5e-151 537.7 435 66.4
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.1e-150 537.3 459 64.1
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 7.2e-150 534.6 395 71.4
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 9.4e-150 534.3 460 63.5
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 3.6e-149 532.3 339 79.1
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 8.0e-149 531.2 464 64.2
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 3.0e-148 529.3 459 61.0
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 4.0e-148 528.9 488 58.6
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 4.0e-148 528.9 436 66.1
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 5.2e-148 528.5 503 58.6
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.2e-147 527.3 510 61.0
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.4e-147 525.8 434 65.0
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 4.4e-147 525.4 426 64.8
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 5.7e-147 525.0 460 60.7
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 9.8e-147 524.2 434 64.7
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 3.1e-145 519.2 446 61.0
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.6e-144 516.9 420 64.0
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.0e-143 514.2 458 59.6
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.0e-143 514.2 460 61.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.9e-143 512.7 460 59.6
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 8.6e-143 511.1 462 60.4
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.5e-142 509.6 458 62.9
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 7.2e-142 508.1 366 72.1
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.2e-141 507.3 460 60.0
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 2.8e-141 506.1 463 58.7
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 4.7e-141 505.4 485 60.2
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 8.0e-141 504.6 495 59.4
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 3.0e-140 502.7 410 65.6
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 1.2e-139 500.7 432 61.8
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.3e-138 497.3 458 60.3
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 4.9e-138 495.4 455 58.5
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 4.9e-138 495.4 455 58.5
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.1e-137 492.7 365 68.5
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 3.8e-135 485.7 409 63.3
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 3.8e-135 485.7 435 59.3
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 5.0e-135 485.3 387 67.7
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 7.3e-134 481.5 470 57.9
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 7.3e-134 481.5 379 68.3
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 5.2e-132 475.3 436 58.0
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.2e-131 474.2 430 58.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.2e-131 474.2 433 59.8
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 3.4e-131 472.6 431 60.3
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 5.7e-131 471.9 430 60.7
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 3.0e-127 459.5 332 72.3
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.9e-127 459.1 467 55.7
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 3.3e-126 456.1 417 58.3
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 3.3e-126 456.1 461 55.7
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 2.1e-125 453.4 461 55.5
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 3.1e-124 449.5 487 55.2
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 4.0e-124 449.1 390 58.5
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.2e-123 447.6 417 57.6
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 7.5e-123 444.9 407 60.4
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.7e-122 442.6 473 52.2
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.4e-122 441.8 433 54.3
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 4.6e-120 435.6 525 50.5
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 3.0e-119 433.0 434 52.8
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.2e-114 416.8 457 53.8
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 2.9e-114 416.4 413 54.2
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 8.3e-114 414.8 428 52.6
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.9e-113 413.7 312 67.3
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 7.1e-113 411.8 368 59.8
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.6e-112 410.6 454 48.7
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.6e-112 410.6 414 56.5
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 3.5e-112 409.5 326 61.0
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 2.3e-111 406.8 473 51.6
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.0e-111 406.4 277 74.7
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.1e-111 405.6 264 76.1
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 2.8e-101 373.2 354 56.2
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 8.1e-101 371.7 457 46.4
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 2.0e-99 367.1 286 67.5
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 7.6e-99 365.2 417 51.6
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 4.9e-98 362.5 417 51.1
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.9e-98 362.5 447 50.1
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-97 360.5 417 51.6
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.3e-95 354.4 344 51.7
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 3.6e-93 346.3 417 50.1
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 2.0e-91 340.5 286 66.4
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-91 339.7 442 48.2
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 8.4e-90 335.1 476 43.3
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 4.6e-88 329.3 376 51.3
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 6.0e-88 328.9 376 51.3
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 7.9e-88 328.6 381 52.0
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 5.3e-84 315.8 363 51.5
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.5e-83 314.3 365 50.7
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 9.0e-76 288.5 208 71.6
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 5.5e-65 252.7 460 39.6
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 3.6e-64 250.0 459 39.2
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.2e-56 224.9 498 34.9
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.8e-53 213.0 153 68.6
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 8.0e-48 195.7 200 52.5
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.7e-45 188.0 125 69.6
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 4.5e-43 179.9 148 66.9
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 6.3e-37 159.5 94 80.9
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.2e-34 151.0 166 51.2
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 3.4e-30 137.1 146 49.3
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.0e-26 125.6 119 54.6
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.3e-26 125.2 131 54.2
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 1.5e-25 121.7 156 52.6
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.9e-25 121.3 98 59.2
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 8.0e-24 115.9 84 69.0
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-23 114.8 94 59.6
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 5.2e-23 113.2 101 57.4
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-22 111.7 94 59.6
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 5.4e-20 103.2 214 34.1
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 2.3e-18 97.8 64 79.7
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 3.8e-18 97.1 322 29.8
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 3.3e-17 94.0 73 69.9
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 4.7e-16 90.1 145 41.4
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.2e-14 85.5 142 41.5
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 2.9e-13 80.9 96 47.9
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 5.4e-12 76.6 138 34.1
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 7.8e-11 72.8 54 57.4
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 7.8e-11 72.8 54 57.4
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 6.6e-10 69.7 191 32.5
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 8.6e-10 69.3 49 63.3
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 1.9e-09 68.2 138 31.9
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 3.6e-08 63.9 89 42.7
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 3.6e-08 63.9 39 79.5
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 3.1e-07 60.8 85 48.2
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 1.5e-06 58.5 83 47.0
SHI14588 Sapria himalayana HOM05D003649 ORTHO05D004498 9.8e-06 55.8 40 67.5


User provided reference genes

Program Settings