Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 3.2e-281 971.1 481 100.0
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.3e-253 879.4 481 89.8
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 8.1e-253 876.7 481 89.8
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.8e-252 875.5 477 90.1
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.6e-251 871.7 473 90.3
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.9e-251 869.8 492 87.6
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.2e-249 864.4 470 89.8
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.1e-241 839.7 457 90.4
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 7.9e-232 807.0 482 81.7
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.2e-229 798.9 476 80.9
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.2e-229 797.0 475 81.5
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.8e-228 795.8 479 81.2
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 2.4e-228 795.4 479 81.6
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.3e-228 794.3 469 81.4
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.5e-227 792.7 474 81.4
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 5.9e-227 790.8 474 80.8
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.3e-226 789.6 474 81.6
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 3.8e-226 788.1 471 80.5
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.6e-224 782.7 476 79.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.1e-224 782.3 470 84.0
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.1e-224 782.3 476 79.6
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.7e-224 781.9 467 79.7
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 4.7e-224 781.2 474 79.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 4.7e-224 781.2 476 78.8
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 4.4e-222 774.6 473 79.5
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.7e-222 774.2 476 78.8
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.3e-221 773.1 477 79.0
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.7e-221 772.7 469 79.7
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.8e-221 771.9 474 77.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 8.2e-221 770.4 474 78.1
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.1e-220 770.0 474 77.4
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 9.1e-220 766.9 467 78.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-219 766.5 474 79.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.2e-219 766.5 474 77.2
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.5e-219 766.1 470 77.4
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.5e-219 766.1 474 77.4
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 2.0e-219 765.8 473 77.6
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 3.5e-219 765.0 473 76.3
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 5.9e-219 764.2 475 78.9
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 5.9e-219 764.2 468 78.4
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.7e-218 762.7 468 79.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.7e-218 762.7 474 76.6
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 9.4e-217 756.9 472 76.7
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 3.6e-216 755.0 473 78.0
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.3e-215 752.3 468 77.1
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 3.9e-215 751.5 473 77.4
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 7.4e-214 747.3 460 79.1
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 9.7e-214 746.9 478 76.2
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.4e-212 743.0 475 74.9
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 7.0e-212 740.7 465 76.1
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.6e-211 738.8 470 76.0
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.0e-210 736.9 471 75.4
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.1e-209 733.4 452 78.5
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.5e-209 733.0 473 73.8
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.9e-209 732.6 449 78.2
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.5e-209 732.3 470 75.1
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 3.2e-209 731.9 470 75.1
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 7.2e-209 730.7 470 74.9
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 9.4e-209 730.3 470 74.9
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.7e-208 728.8 439 79.3
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.3e-207 725.7 434 81.3
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 4.0e-207 724.9 474 75.1
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 4.0e-207 724.9 428 81.1
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 5.2e-207 724.5 469 75.7
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.8e-204 716.1 539 67.0
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 9.1e-204 713.8 479 72.9
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.2e-203 713.4 472 74.8
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 3.5e-203 711.8 472 72.5
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 4.5e-203 711.4 475 73.9
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 5.9e-203 711.1 463 74.7
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.7e-202 709.5 469 74.4
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 3.8e-202 708.4 471 73.0
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 2.5e-201 705.7 480 72.3
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.5e-198 696.4 471 74.5
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 4.4e-198 694.9 472 73.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 2.8e-197 692.2 426 77.5
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.4e-196 689.1 470 72.1
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 5.4e-196 688.0 468 71.2
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.2e-195 686.8 479 72.0
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.6e-194 681.0 475 71.2
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 3.3e-193 678.7 477 71.3
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.2e-192 676.8 476 71.2
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 2.1e-192 676.0 471 71.5
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 2.1e-192 676.0 471 71.5
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 2.1e-192 676.0 476 71.0
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.6e-192 675.2 414 77.8
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.8e-191 672.9 476 70.4
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.3e-191 672.5 475 70.5
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 3.0e-191 672.2 476 70.6
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 8.9e-191 670.6 468 72.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.4e-190 668.3 518 64.1
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.2e-189 666.0 468 72.0
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.8e-188 662.9 471 71.1
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 3.1e-188 662.1 473 70.4
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 3.1e-188 662.1 473 70.4
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 9.2e-188 660.6 471 70.9
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 9.2e-188 660.6 485 70.1
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.2e-188 660.6 474 71.1
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.1e-185 653.7 496 66.3
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.6e-185 651.4 350 90.3
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 6.1e-184 647.9 526 64.1
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 5.8e-182 641.3 474 67.5
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.7e-181 639.8 475 66.7
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 6.4e-181 637.9 469 66.5
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 7.8e-179 630.9 415 72.3
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 1.1e-177 627.1 447 69.8
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 5.8e-174 614.8 368 79.1
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 4.9e-173 611.7 475 68.0
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.5e-169 600.1 467 66.6
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.5e-169 600.1 409 72.1
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.1e-163 579.7 480 61.5
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 4.3e-161 572.0 509 58.2
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.2e-158 563.9 488 60.5
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.8e-157 558.9 363 75.5
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.9e-157 558.5 468 62.6
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.8e-152 542.0 474 61.0
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 3.1e-151 539.3 467 60.4
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 3.2e-140 502.7 467 55.9
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 7.9e-131 471.5 539 47.5
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.3e-129 465.7 472 54.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 4.8e-120 435.6 269 76.2
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.9e-114 416.0 329 68.4
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 9.7e-113 411.4 306 66.3
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.4e-108 397.5 238 81.5
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 5.3e-95 352.4 480 45.0
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-91 341.3 289 66.4
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.1e-87 326.6 205 74.6
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 5.9e-86 322.4 378 45.5
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 4.7e-83 312.8 271 60.1
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.6e-78 297.7 492 36.8
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 8.9e-74 282.0 269 53.2
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.3e-72 275.4 248 60.1
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.7e-69 267.7 457 40.0
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.9e-69 266.5 469 38.2
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 2.5e-68 263.8 505 36.4
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.5e-60 238.0 174 72.4
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.6e-54 218.0 181 60.2
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.0e-54 216.1 288 45.1
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.7e-53 214.5 209 52.6
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.1e-52 211.8 111 88.3
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-51 208.4 111 86.5
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.7e-51 206.5 111 85.6
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 6.2e-51 206.1 198 53.0
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.3e-45 187.6 202 53.0
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.4e-42 177.6 111 76.6
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 2.4e-39 167.5 125 63.2
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 9.3e-39 165.6 107 73.8
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.7e-37 161.4 107 70.1
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-36 158.3 339 33.3
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 4.4e-33 146.7 104 68.3
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.3e-32 145.2 122 59.0
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 3.8e-32 143.7 92 68.5
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.1e-28 132.1 67 94.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 2.2e-24 117.9 125 56.0
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 6.4e-24 116.3 67 79.1
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.5e-17 95.1 58 75.9
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 1.8e-13 81.6 62 64.5
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 1.3e-08 65.5 39 79.5
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 5.0e-08 63.5 45 68.9
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 8.4e-08 62.8 42 73.8
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.9e-07 61.6 42 71.4
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.2e-06 58.9 33 78.8


User provided reference genes

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