Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 0.0e+00 1108.6 555 100.0
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 9.3e-269 929.9 553 86.3
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 1.7e-254 882.5 551 80.2
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 6.3e-249 864.0 551 78.4
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 3.5e-247 858.2 551 78.0
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 6.5e-230 800.8 520 76.7
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 3.4e-218 761.9 485 77.3
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 1.7e-209 733.0 562 66.2
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 2.2e-201 706.1 565 63.0
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 6.0e-199 698.0 560 64.1
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 4.7e-196 688.3 546 64.8
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 4.7e-196 688.3 587 60.6
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 1.3e-193 680.2 570 62.5
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 6.4e-193 677.9 551 62.8
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 7.1e-192 674.5 545 63.9
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 1.6e-188 663.3 556 62.8
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 8.4e-185 651.0 595 57.8
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 2.7e-183 646.0 573 59.9
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 7.8e-183 644.4 559 60.8
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 6.6e-182 641.3 557 59.1
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 8.7e-182 641.0 560 58.6
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 1.5e-181 640.2 555 60.5
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 5.6e-181 638.3 601 56.4
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 2.1e-180 636.3 574 58.5
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 2.1e-180 636.3 582 57.9
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 2.8e-180 636.0 562 57.5
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 3.6e-180 635.6 560 58.6
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 6.2e-180 634.8 556 59.4
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 2.6e-178 629.4 566 58.8
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 4.5e-178 628.6 556 59.0
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 4.5e-178 628.6 559 58.3
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 3.8e-177 625.5 544 61.9
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 2.7e-175 619.4 578 55.5
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 1.8e-174 616.7 563 57.0
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 1.8e-174 616.7 546 57.9
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 1.8e-174 616.7 615 54.0
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 2.3e-174 616.3 577 56.2
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 1.1e-173 614.0 562 56.8
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 1.5e-173 613.6 560 56.6
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 1.5e-173 613.6 561 58.1
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 3.3e-173 612.5 555 57.7
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 7.4e-173 611.3 567 58.0
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 1.3e-172 610.5 555 56.9
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 4.8e-172 608.6 562 57.7
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 4.8e-172 608.6 556 57.0
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 1.8e-171 606.7 561 56.3
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 1.5e-170 603.6 563 56.5
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 2.6e-170 602.8 555 56.2
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 3.4e-170 602.4 566 56.0
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 1.3e-169 600.5 555 56.9
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 4.9e-169 598.6 569 56.2
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 1.3e-166 590.5 555 55.3
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 3.0e-166 589.3 573 55.3
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 3.9e-166 589.0 544 56.1
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 3.3e-165 585.9 493 60.0
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 2.1e-164 583.2 566 54.2
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 4.8e-164 582.0 616 52.8
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 3.1e-163 579.3 669 50.1
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 9.0e-163 577.8 616 52.9
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 1.2e-159 567.4 512 59.8
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 7.9e-159 564.7 566 53.0
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 3.1e-155 552.7 580 50.7
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 1.0e-153 547.7 574 52.8
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 1.3e-153 547.4 581 52.8
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 5.5e-152 542.0 502 56.8
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 1.2e-151 540.8 534 53.2
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 1.1e-147 527.7 580 50.3
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 3.0e-142 509.6 526 53.0
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 3.0e-142 509.6 571 48.3
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 5.1e-142 508.8 410 62.2
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 5.7e-141 505.4 529 53.7
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 2.9e-137 493.0 485 53.4
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 4.2e-136 489.2 562 48.9
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 6.5e-129 465.3 372 62.4
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 2.8e-124 449.9 572 46.5
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 9.1e-123 444.9 509 48.1
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.2e-109 401.4 571 41.5
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 1.8e-107 394.0 346 56.1
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.0e-105 388.3 433 48.0
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 5.0e-105 386.0 365 58.4
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 1.1e-104 384.8 385 57.4
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 3.3e-104 383.3 599 37.9
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 3.4e-101 373.2 281 66.9
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 6.4e-100 369.0 542 40.0
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 1.9e-99 367.5 267 67.0
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 5.8e-93 345.9 363 52.9
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 1.5e-88 331.3 282 58.9
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 9.2e-83 312.0 437 43.7
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 2.1e-74 284.3 246 62.2
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 1.2e-71 275.0 196 66.3
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 3.6e-71 273.5 283 51.9
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 5.3e-70 269.6 447 41.2
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 4.5e-61 240.0 213 57.7
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 1.6e-50 204.9 239 49.0
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 2.3e-49 201.1 152 65.8
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 3.8e-44 183.7 196 50.0
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 3.8e-44 183.7 196 50.0
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 1.3e-41 175.3 179 56.4
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 2.3e-41 174.5 123 61.8
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 5.3e-38 163.3 223 45.3
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 6.9e-38 162.9 100 72.0
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.7e-36 158.3 117 57.3
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.1e-35 155.6 194 46.9
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 2.6e-29 134.4 122 55.7
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 5.1e-25 120.2 135 48.9
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 9.1e-22 109.4 135 49.6
RcHm_v2.0_Chr6g0273061 Rosa chinensis HOM05D007146 ORTHO05D008971 3.8e-12 77.4 52 61.5
FAN16G0561 Fragaria x ananassa HOM05D007146 ORTHO05D008971 9.4e-11 72.8 68 60.3
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 9.4e-11 72.8 148 37.8
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 4.7e-10 70.5 76 50.0


User provided reference genes

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