Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 9.8e-77 290.0 145 100.0
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 6.6e-57 224.2 139 82.0
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 1.2e-55 219.9 121 90.9
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 3.6e-55 218.4 124 87.9
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 5.2e-54 214.5 139 79.1
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 5.2e-54 214.5 131 80.9
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 1.5e-53 213.0 138 78.3
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 4.4e-53 211.5 139 75.5
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 5.8e-53 211.1 139 75.5
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 7.6e-53 210.7 139 77.0
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 1.7e-52 209.5 130 80.8
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.8e-52 208.4 124 83.9
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 4.9e-52 208.0 124 84.7
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 8.4e-52 207.2 124 83.9
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 1.1e-51 206.8 139 72.7
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 1.9e-51 206.1 131 78.6
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 2.4e-51 205.7 131 77.1
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 4.1e-51 204.9 139 74.1
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 9.2e-51 203.8 130 73.8
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 1.2e-50 203.4 139 71.2
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 1.6e-50 203.0 130 76.2
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 2.7e-50 202.2 140 73.6
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 6.0e-50 201.1 131 77.1
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 3.0e-49 198.7 124 76.6
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 3.0e-49 198.7 124 76.6
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 3.9e-49 198.4 139 74.8
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 5.1e-49 198.0 130 76.2
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 6.6e-49 197.6 131 74.0
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 8.7e-49 197.2 141 74.5
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.1e-48 196.8 139 72.7
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 1.5e-48 196.4 138 65.9
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 3.3e-48 195.3 131 73.3
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 4.3e-48 194.9 139 71.9
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 5.6e-48 194.5 131 69.5
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 7.3e-48 194.1 121 79.3
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 7.3e-48 194.1 131 72.5
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 7.3e-48 194.1 131 72.5
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 7.3e-48 194.1 139 69.8
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 9.6e-48 193.7 129 73.6
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 1.2e-47 193.4 130 74.6
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 1.2e-47 193.4 131 73.3
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 1.2e-47 193.4 131 67.2
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 4.7e-47 191.4 131 67.2
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 4.7e-47 191.4 134 67.9
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 6.2e-47 191.0 138 65.9
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 6.2e-47 191.0 138 63.8
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 8.1e-47 190.7 137 72.3
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 8.1e-47 190.7 138 67.4
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 1.4e-46 189.9 139 66.2
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 5.2e-46 188.0 131 67.9
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 5.2e-46 188.0 132 69.7
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 5.2e-46 188.0 131 72.5
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 2.6e-45 185.7 131 66.4
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 3.4e-45 185.3 131 67.2
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 1.3e-44 183.3 133 69.9
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 1.3e-44 183.3 139 68.3
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 1.7e-44 183.0 131 64.1
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 1.7e-44 183.0 130 68.5
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 3.8e-44 181.8 140 68.6
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 6.4e-44 181.0 133 69.2
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 1.1e-43 180.3 133 69.2
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 1.1e-43 180.3 131 67.2
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 2.4e-43 179.1 113 81.4
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 2.4e-43 179.1 113 77.0
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 3.2e-43 178.7 124 71.8
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 3.5e-42 175.3 162 54.3
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 3.5e-42 175.3 121 71.9
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 2.3e-41 172.6 118 70.3
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 2.3e-41 172.6 144 63.2
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 5.1e-41 171.4 131 66.4
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 8.7e-41 170.6 129 66.7
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 8.7e-41 170.6 132 65.2
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 2.5e-40 169.1 124 65.3
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 4.3e-40 168.3 122 67.2
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 1.6e-39 166.4 126 67.5
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 2.1e-39 166.0 131 64.1
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 2.8e-39 165.6 126 65.1
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 1.4e-38 163.3 123 68.3
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 3.1e-38 162.2 123 66.7
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 1.3e-36 156.8 131 60.3
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 1.7e-36 156.4 131 60.3
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 4.2e-35 151.8 136 58.8
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 4.2e-35 151.8 136 55.1
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 2.7e-34 149.1 115 68.7
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 8.7e-33 144.1 124 58.1
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 9.6e-32 140.6 94 70.2
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 1.1e-30 137.1 75 89.3
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 9.0e-30 134.0 128 55.5
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 6.4e-28 127.9 131 45.8
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 7.1e-27 124.4 84 67.9
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 9.3e-27 124.0 79 73.4
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 1.0e-25 120.6 85 64.7
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 5.1e-25 118.2 124 45.2
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 1.9e-24 116.3 121 59.5
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 9.6e-24 114.0 73 74.0
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 2.1e-23 112.8 83 67.5
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 2.1e-23 112.8 123 41.5
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 3.7e-23 112.1 137 44.5
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 1.2e-21 107.1 94 57.4
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.3e-20 103.6 128 40.6
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 3.0e-17 92.4 60 70.0
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 1.2e-13 80.5 67 62.7
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 2.6e-13 79.3 55 69.1
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 2.6e-13 79.3 55 69.1
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 6.5e-12 74.7 63 60.3
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 4.2e-11 72.0 89 39.3
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 2.1e-10 69.7 52 63.5
SGA_v2.0_scaffold62G21353 Striga asiatica HOM05D058974 ORTHO05D402092 6.3e-07 58.2 33 81.8
TPR.G22507 Trifolium pratense HOM05D006956 ORTHO05D008824 6.3e-07 58.2 36 69.4


User provided reference genes

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