Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 3.3e-36 154.8 97 100.0
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 3.4e-25 118.2 96 66.7
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 6.7e-21 104.0 56 89.3
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 1.1e-20 103.2 53 92.5
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 7.4e-20 100.5 56 83.9
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 7.4e-20 100.5 53 90.6
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 9.6e-20 100.1 58 82.8
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 9.6e-20 100.1 54 87.0
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 1.6e-19 99.4 54 87.0
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 2.1e-19 99.0 57 82.5
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 2.1e-19 99.0 56 83.9
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 2.1e-19 99.0 56 85.7
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 2.8e-19 98.6 58 79.3
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 4.8e-19 97.8 54 88.9
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 4.8e-19 97.8 55 83.6
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 8.2e-19 97.1 56 87.5
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 1.1e-18 96.7 58 75.9
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 1.1e-18 96.7 56 76.8
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 1.4e-18 96.3 56 83.9
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 1.8e-18 95.9 58 77.6
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 1.8e-18 95.9 57 78.9
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 3.1e-18 95.1 53 84.9
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 3.1e-18 95.1 53 84.9
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 4.0e-18 94.7 53 83.0
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 4.0e-18 94.7 56 80.4
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 4.0e-18 94.7 56 80.4
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 6.9e-18 94.0 50 90.0
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 9.0e-18 93.6 57 75.4
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 9.0e-18 93.6 51 88.2
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 1.2e-17 93.2 56 78.6
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.5e-17 92.8 55 80.0
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 2.6e-17 92.0 53 79.2
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 3.4e-17 91.7 57 73.7
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 4.5e-17 91.3 57 73.7
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 4.5e-17 91.3 56 75.0
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 4.5e-17 91.3 53 83.0
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 4.5e-17 91.3 53 83.0
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 5.8e-17 90.9 57 75.4
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 1.0e-16 90.1 55 72.7
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 1.0e-16 90.1 57 75.4
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 1.3e-16 89.7 56 78.6
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 1.7e-16 89.4 53 79.2
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 2.2e-16 89.0 57 71.9
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 2.2e-16 89.0 57 71.9
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 2.2e-16 89.0 57 71.9
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 2.2e-16 89.0 57 71.9
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 2.2e-16 89.0 55 76.4
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 2.2e-16 89.0 55 76.4
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 2.2e-16 89.0 57 71.9
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 2.9e-16 88.6 57 70.2
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 2.9e-16 88.6 57 75.4
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 3.8e-16 88.2 57 70.2
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 4.9e-16 87.8 56 75.0
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 4.9e-16 87.8 56 76.8
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 6.5e-16 87.4 56 76.8
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 6.5e-16 87.4 56 76.8
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 6.5e-16 87.4 53 77.4
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 8.4e-16 87.0 57 71.9
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 1.4e-15 86.3 57 71.9
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 2.5e-15 85.5 58 67.2
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 3.2e-15 85.1 58 67.2
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 3.2e-15 85.1 57 70.2
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 9.3e-15 83.6 56 66.1
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 1.2e-14 83.2 56 69.6
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 1.6e-14 82.8 58 65.5
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 1.3e-13 79.7 57 68.4
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 1.8e-13 79.3 53 71.7
MD05G1300500 Malus domestica HOM05D007991 ORTHO05D010158 1.8e-13 79.3 48 83.3
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 3.9e-13 78.2 53 73.6
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 8.7e-13 77.0 57 68.4
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 2.5e-12 75.5 52 71.2
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 4.3e-12 74.7 57 66.7
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 1.6e-11 72.8 55 63.6
Nn4g23994 Nelumbo nucifera HOM05D007991 ORTHO05D010158 1.6e-11 72.8 53 67.9
Os08g0104400 Oryza sativa ssp. japonica HOM05D007991 ORTHO05D010158 1.0e-08 63.5 54 51.9
Zm00001eb260130 Zea mays HOM05D007991 ORTHO05D010158 4.2e-07 58.2 57 50.9


User provided reference genes

Program Settings