Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 1.4e-78 296.2 145 100.0
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 7.1e-59 230.7 174 73.6
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 3.5e-50 201.8 164 67.1
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 4.3e-48 194.9 164 64.6
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 1.1e-46 190.3 168 63.1
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 1.4e-46 189.9 165 61.8
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 1.8e-46 189.5 163 60.7
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 4.0e-46 188.3 164 63.4
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 2.0e-45 186.0 163 60.1
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 3.4e-45 185.3 164 62.8
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 3.4e-45 185.3 163 60.1
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 5.8e-45 184.5 164 61.6
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 7.6e-45 184.1 164 61.0
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 7.6e-45 184.1 163 59.5
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 7.6e-45 184.1 163 59.5
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 9.9e-45 183.7 162 60.5
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 2.2e-44 182.6 164 57.9
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 2.2e-44 182.6 163 62.6
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 2.9e-44 182.2 163 59.5
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 4.9e-44 181.4 163 61.3
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 8.4e-44 180.6 163 62.0
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 1.1e-43 180.3 164 59.1
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.1e-43 180.3 163 62.6
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 1.9e-43 179.5 169 58.0
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 2.4e-43 179.1 164 57.3
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 3.2e-43 178.7 164 57.3
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 3.2e-43 178.7 164 59.8
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 4.2e-43 178.3 164 59.1
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 4.2e-43 178.3 164 59.1
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 7.1e-43 177.6 167 59.3
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 7.1e-43 177.6 164 59.1
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 9.3e-43 177.2 163 59.5
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 1.2e-42 176.8 164 56.1
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 1.6e-42 176.4 164 59.8
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 2.1e-42 176.0 163 58.9
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 6.0e-42 174.5 180 56.1
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 7.8e-42 174.1 164 56.1
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 7.8e-42 174.1 164 58.5
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 1.0e-41 173.7 164 57.3
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 1.0e-41 173.7 165 57.0
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 1.7e-41 172.9 164 55.5
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 3.0e-41 172.2 160 60.0
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 6.6e-41 171.0 163 55.8
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 1.1e-40 170.2 164 53.7
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 1.5e-40 169.9 190 51.1
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 2.5e-40 169.1 164 54.3
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 4.3e-40 168.3 164 54.9
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 9.6e-40 167.2 164 55.5
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 9.6e-40 167.2 163 55.8
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 1.6e-39 166.4 171 55.6
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 6.2e-39 164.5 161 57.1
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 6.2e-39 164.5 164 53.7
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 1.1e-38 163.7 163 52.8
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 3.1e-38 162.2 164 53.0
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 3.1e-38 162.2 164 53.7
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 5.3e-38 161.4 165 55.2
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 2.6e-37 159.1 168 51.8
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 4.5e-37 158.3 165 52.7
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 1.3e-36 156.8 102 72.5
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 2.2e-36 156.0 183 48.6
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.1e-35 153.7 164 49.4
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 1.9e-35 152.9 168 49.4
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.9e-35 152.9 165 53.3
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 7.1e-35 151.0 174 48.3
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 2.1e-34 149.4 164 48.8
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 2.7e-34 149.1 164 50.0
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 3.5e-34 148.7 196 43.4
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 3.5e-34 148.7 174 47.7
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 6.0e-34 147.9 168 50.6
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 1.8e-33 146.4 165 49.1
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 2.3e-33 146.0 164 46.3
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 3.0e-33 145.6 180 45.6
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 3.0e-33 145.6 159 49.7
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 3.0e-33 145.6 162 50.6
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 3.0e-33 145.6 160 51.9
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 5.1e-33 144.8 97 73.2
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 5.1e-33 144.8 97 73.2
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 2.1e-31 139.4 110 61.8
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 2.4e-30 136.0 164 45.7
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 1.2e-29 133.7 165 47.9
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 2.6e-29 132.5 165 47.9
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 3.4e-29 132.1 103 62.1
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 4.5e-29 131.7 165 46.1
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 4.5e-29 131.7 144 52.1
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 5.8e-29 131.3 97 62.9
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 2.2e-28 129.4 117 62.4
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 8.7e-25 117.5 169 43.8
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 8.7e-25 117.5 121 59.5
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.1e-24 117.1 127 56.7
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 6.2e-23 111.3 164 44.5
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 2.2e-20 102.8 63 77.8
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 4.2e-19 98.6 136 47.1
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 2.1e-18 96.3 97 49.5
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 1.8e-17 93.2 131 46.6
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 6.7e-17 91.3 131 45.0
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.5e-16 89.4 159 36.5
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 5.3e-14 81.6 164 29.3
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 2.6e-13 79.3 62 64.5
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.6e-13 79.3 132 38.6
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 3.4e-13 79.0 157 29.9
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 4.5e-13 78.6 129 36.4
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 7.7e-13 77.8 107 46.7
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.4e-09 67.0 62 54.8
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 3.7e-07 58.9 44 63.6
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 5.3e-06 55.1 29 75.9


User provided reference genes

Program Settings