Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1562.0 842 100.0
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1338.2 833 86.4
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1324.7 843 86.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 0.0e+00 1227.2 846 78.5
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 0.0e+00 1208.7 843 77.2
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 0.0e+00 1169.5 843 75.9
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 0.0e+00 1153.7 843 74.9
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1134.0 842 74.6
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1132.1 842 74.1
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 0.0e+00 1126.3 840 74.3
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 0.0e+00 1121.7 837 73.6
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 0.0e+00 1106.3 844 71.2
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1099.7 845 72.0
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 0.0e+00 1098.2 846 70.8
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 0.0e+00 1097.4 837 71.7
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 0.0e+00 1097.4 843 72.1
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 0.0e+00 1095.5 839 72.3
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1092.4 845 71.4
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 0.0e+00 1089.7 842 72.2
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 0.0e+00 1089.7 829 69.6
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 0.0e+00 1089.3 841 70.6
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 0.0e+00 1082.8 834 71.3
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 0.0e+00 1080.5 830 69.6
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 0.0e+00 1079.3 830 69.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 5.8e-312 1073.5 835 69.7
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.9e-311 1071.6 832 69.6
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 6.9e-311 1070.5 841 68.6
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.0e-310 1068.9 842 70.3
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.5e-310 1068.5 831 71.1
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 3.3e-310 1068.1 829 68.8
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.3e-309 1066.2 837 68.6
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.7e-309 1065.8 837 68.1
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.1e-308 1063.1 830 69.3
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.8e-308 1062.4 832 69.7
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.4e-308 1062.0 832 69.0
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.6e-307 1058.5 838 69.9
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 2.6e-307 1058.5 843 70.5
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.5e-307 1058.1 835 68.3
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.8e-306 1054.7 834 69.1
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 4.2e-305 1051.2 843 68.1
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 9.4e-305 1050.0 838 68.0
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.7e-304 1048.5 846 69.9
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.7e-304 1048.5 842 67.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.6e-302 1042.0 835 68.7
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 8.5e-298 1026.9 831 68.6
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.5e-297 1026.2 843 67.1
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.2e-296 1023.1 837 67.5
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 6.1e-296 1020.8 824 67.2
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 8.0e-296 1020.4 833 67.5
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 5.7e-294 1014.2 845 68.2
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 4.8e-293 1011.1 844 65.3
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.0e-287 991.9 820 66.2
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 9.8e-286 986.9 822 68.0
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 6.3e-285 984.2 827 66.0
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 6.3e-285 984.2 837 65.5
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.0e-282 976.9 835 65.0
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 5.0e-282 974.5 832 65.4
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 8.9e-279 963.8 834 63.1
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.2e-278 963.4 828 65.5
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 9.2e-276 953.7 832 64.8
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 9.2e-276 953.7 826 63.3
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.0e-275 952.6 836 63.4
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 2.5e-273 945.7 845 63.7
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 4.3e-273 944.9 842 63.3
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 3.6e-272 941.8 855 62.6
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.0e-270 936.0 832 63.3
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 8.6e-266 920.6 836 60.6
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.5e-265 919.8 836 60.8
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.6e-264 916.4 921 58.0
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.3e-261 906.7 779 64.4
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 4.1e-260 901.7 828 62.7
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 7.1e-260 901.0 835 59.8
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 9.2e-260 900.6 841 58.9
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 9.2e-260 900.6 835 61.2
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 9.2e-260 900.6 835 61.2
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.3e-258 896.0 842 59.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 8.6e-258 894.0 813 61.7
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.2e-256 890.2 812 60.0
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.1e-255 887.1 842 60.5
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.8e-255 886.3 839 59.1
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.6e-254 882.5 835 60.2
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.6e-254 882.5 835 60.2
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 7.6e-254 880.9 878 58.2
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-253 880.2 842 59.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.2e-251 873.6 829 60.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 8.6e-250 867.5 859 57.6
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.5e-249 866.7 830 60.1
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.2e-247 858.2 857 56.6
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.2e-246 857.1 846 57.1
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.4e-246 855.5 845 61.1
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.3e-242 842.8 828 59.1
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 4.6e-235 818.5 835 55.4
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 1.1e-233 813.9 849 56.8
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 3.5e-227 792.3 679 63.3
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 4.6e-227 792.0 862 55.6
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 4.0e-223 778.9 682 63.2
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.2e-220 769.2 820 54.8
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 2.3e-210 736.5 840 51.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.0e-210 736.1 847 51.0
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.6e-208 730.3 553 68.9
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 6.9e-207 724.9 629 62.3
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-188 664.5 603 63.3
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 5.4e-175 619.0 598 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.8e-168 596.7 872 43.5
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.4e-151 541.2 850 42.6
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-150 538.1 452 64.6
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 7.3e-148 528.9 824 41.6
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.2e-147 528.1 386 73.3
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 2.4e-143 513.8 882 39.6
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 7.8e-142 508.8 382 70.7
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.3e-140 503.4 487 60.4
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.2e-127 459.9 446 61.7
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.0e-125 455.3 424 59.0
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.0e-114 415.6 311 70.1
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 5.1e-109 399.8 941 32.3
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 8.7e-101 372.5 292 66.8
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.6e-94 351.7 444 48.0
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.8e-93 348.2 242 77.3
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.0e-93 347.4 296 70.3
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.5e-92 344.4 321 62.3
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 2.5e-92 344.4 237 78.1
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.0e-88 332.4 333 53.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.7e-83 315.1 227 69.6
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 4.8e-75 287.0 200 72.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.0e-72 279.3 265 66.0
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.5e-60 238.8 932 28.5
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.3e-59 235.7 196 64.8
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 4.8e-59 233.8 216 57.9
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 2.4e-58 231.5 158 72.8
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 9.8e-52 209.5 181 60.2
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.3e-43 182.6 144 67.4
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.9e-43 181.4 207 52.7
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.5e-39 169.1 158 58.9
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 6.8e-37 160.2 170 54.1
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.2e-36 159.5 160 57.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 3.4e-36 157.9 649 26.3
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.4e-34 151.8 106 70.8
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.2e-30 139.4 104 67.3
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 2.8e-30 138.3 276 38.8
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.7e-30 137.5 180 45.0
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.3e-29 135.2 617 25.6
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.3e-27 129.4 273 37.7
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.9e-27 128.3 71 76.1
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 6.4e-27 127.1 281 36.7
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 2.3e-24 118.6 848 24.2
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 6.6e-24 117.1 118 55.9
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 4.7e-22 110.9 96 62.5
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 4.0e-21 107.8 198 48.5
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 5.8e-20 104.0 201 47.3
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 4.9e-19 100.9 178 46.6
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.1e-17 95.5 76 64.5
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.3e-16 92.0 55 76.4
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.4e-13 82.8 60 71.7
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.8e-13 82.4 63 60.3
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 5.2e-13 80.9 62 69.4
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 5.2e-13 80.9 62 69.4
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.5e-12 79.3 67 58.2
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.8e-12 77.4 122 47.5
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.3e-11 76.3 76 51.3
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 4.2e-10 71.2 65 55.4
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.0e-08 65.1 49 69.4
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 8.7e-08 63.5 49 69.4
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.1e-07 63.2 46 71.7
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 8.1e-06 57.0 89 43.8


User provided reference genes

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