Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 2328.5 1193 100.0
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1944.9 1192 83.4
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1911.7 1192 82.3
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1909.4 1193 82.1
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1907.1 1193 82.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1899.4 1193 81.9
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1646.3 1206 71.1
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1625.5 1219 69.3
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1570.8 1229 67.1
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1550.4 1197 67.8
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1542.3 1230 65.4
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1498.0 1205 65.0
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1496.5 1205 65.1
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1488.0 1239 63.0
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1479.2 1206 64.7
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1468.8 1236 62.2
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1465.7 1212 63.1
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1446.4 1206 63.7
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1439.1 1265 60.6
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1435.6 1194 63.7
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1422.1 1220 62.4
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1412.1 1218 63.1
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1408.3 1214 61.8
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1397.1 1255 60.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1394.8 1220 60.2
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1386.3 1222 60.6
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1385.9 1206 61.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1372.5 1197 61.7
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1367.4 1213 60.3
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1366.7 1238 59.6
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1366.7 1221 59.0
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1365.5 1210 60.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1364.0 1226 59.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1364.0 1211 60.7
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1360.5 1220 60.1
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1359.7 1217 59.1
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1352.4 1197 60.7
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1343.2 1227 57.9
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1340.9 1234 59.2
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1339.3 1214 60.0
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1328.5 1193 60.3
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1326.6 1225 57.3
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 0.0e+00 1325.1 830 82.4
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1320.4 1230 59.8
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1315.4 1133 62.6
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1314.7 1198 60.2
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1302.3 1205 57.3
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1297.3 1212 57.5
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1295.0 1205 57.1
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1295.0 1218 56.7
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1291.2 1209 56.8
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1285.0 1198 57.6
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1276.9 1208 56.5
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1270.0 1192 57.8
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1268.4 1211 56.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1268.4 1208 56.1
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1263.1 1203 56.5
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1263.1 1212 57.2
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1261.9 1204 56.6
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1261.1 1204 56.2
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1260.4 1203 56.2
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1256.9 1206 56.5
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1248.8 1387 51.9
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1248.4 1207 56.1
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1246.9 1258 54.7
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1240.3 1197 57.2
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1238.0 1220 54.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1236.9 1206 55.6
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1234.6 1196 55.2
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1229.2 1317 53.1
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1227.6 1239 53.8
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1226.5 1214 56.1
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1187.6 1199 54.7
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1176.0 1206 53.2
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1164.1 1425 48.9
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1153.7 1228 50.2
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1133.6 1143 55.0
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1130.9 1206 52.4
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1115.9 1124 55.3
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 0.0e+00 1087.4 1039 55.9
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.9e-306 1056.2 858 64.7
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.3e-296 1023.5 1215 47.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 7.1e-266 921.4 825 59.3
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.4e-258 897.1 1038 48.3
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 6.3e-254 881.7 711 63.4
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 2.3e-248 863.2 1140 43.9
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 5.1e-248 862.1 737 60.2
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.6e-239 833.2 893 52.6
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.2e-226 789.6 680 60.1
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.0e-179 635.2 678 51.6
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 3.4e-175 620.2 434 73.7
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 6.6e-171 605.9 513 62.8
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 2.9e-166 590.5 1202 35.7
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.0e-163 580.5 434 69.4
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 5.1e-163 579.7 1259 31.9
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 4.2e-149 533.5 329 80.5
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 4.6e-148 530.0 386 70.5
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.1e-146 525.4 1282 31.1
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.6e-145 521.5 671 41.4
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 2.6e-127 461.1 443 58.7
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 4.2e-109 400.6 381 56.7
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 3.8e-102 377.5 381 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.9e-101 375.2 867 31.4
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-100 372.5 473 40.6
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.4e-96 359.0 355 55.8
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.6e-95 355.5 265 67.5
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 6.6e-86 323.6 581 37.9
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 6.0e-79 300.4 764 34.0
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.2e-75 287.3 369 46.6
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.6e-70 270.0 442 37.6
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 3.6e-68 264.6 230 64.3
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 1.5e-66 259.2 232 61.2
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.6e-62 243.8 164 73.2
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 8.7e-62 243.4 140 87.1
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.5e-55 221.5 138 77.5
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.9e-53 215.7 370 40.3
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 2.8e-52 211.8 254 45.3
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.4e-51 209.5 191 60.7
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-50 206.5 321 42.4
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.5e-50 206.1 147 70.1
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-47 196.4 320 41.6
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 2.5e-45 188.7 138 67.4
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 7.4e-45 187.2 298 39.6
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 9.0e-43 180.3 1035 23.1
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 4.6e-39 167.9 168 56.0
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 3.4e-34 151.8 681 24.2
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.0e-33 150.2 1194 23.0
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 1.6e-31 142.9 141 52.5
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 2.6e-26 125.6 168 45.8
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 2.2e-25 122.5 151 47.0
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.5e-25 120.9 78 73.1
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.4e-24 119.8 97 61.9
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 4.6e-23 114.8 587 24.4
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.8e-22 112.8 278 32.7
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 4.3e-21 108.2 61 83.6
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 9.7e-21 107.1 91 60.4
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.3e-20 106.7 148 48.6
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.7e-20 106.3 178 45.5
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 4.8e-20 104.8 100 51.0
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.2e-18 100.1 359 27.0
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.5e-18 99.8 100 45.0
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 2.6e-18 99.0 65 80.0
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 5.9e-18 97.8 255 32.9
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 2.2e-17 95.9 89 55.1
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.9e-16 92.8 98 46.9
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.4e-14 86.7 61 70.5
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 3.3e-13 82.0 73 53.4
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 1.3e-12 80.1 103 47.6
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 2.2e-12 79.3 103 47.6
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.1e-11 77.0 52 78.8
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 1.1e-11 77.0 69 56.5
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.4e-11 75.9 142 35.9
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 1.1e-08 67.0 51 62.7
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 5.5e-08 64.7 99 40.4
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 3.6e-07 62.0 37 75.7


User provided reference genes

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