Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 7.7e-239 830.1 423 100.0
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 5.7e-218 760.8 407 92.9
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 2.4e-208 728.8 435 85.3
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 2.0e-207 725.7 413 87.7
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 2.7e-199 698.7 443 80.4
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 1.0e-198 696.8 413 83.3
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 2.3e-198 695.7 413 83.1
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 4.3e-197 691.4 407 83.5
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 6.8e-195 684.1 413 81.1
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 8.9e-195 683.7 407 83.0
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 3.4e-194 681.8 413 80.9
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 2.2e-193 679.1 420 79.3
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.1e-192 676.8 407 81.8
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 2.4e-192 675.6 419 80.0
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 7.0e-192 674.1 414 79.5
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 1.2e-191 673.3 413 80.9
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 6.0e-191 671.0 407 79.9
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 2.3e-190 669.1 413 78.5
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 9.5e-189 663.7 407 80.3
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 2.8e-188 662.1 407 79.9
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 3.6e-188 661.8 405 78.5
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 4.7e-188 661.4 405 79.5
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 6.2e-188 661.0 405 79.3
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 8.1e-188 660.6 405 79.0
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 2.3e-187 659.1 425 76.7
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 4.0e-187 658.3 405 78.0
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 5.2e-187 657.9 413 78.0
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 2.6e-186 655.6 400 79.2
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 3.4e-186 655.2 412 78.6
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 5.8e-186 654.4 407 79.4
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 2.2e-185 652.5 411 77.1
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 3.7e-185 651.7 413 77.5
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 6.4e-185 651.0 404 78.5
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 8.3e-185 650.6 407 76.9
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 4.1e-184 648.3 396 80.8
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 1.6e-183 646.4 414 76.1
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.7e-183 645.6 374 86.1
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 1.3e-182 643.3 419 75.2
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 5.1e-182 641.3 414 74.9
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 1.5e-181 639.8 388 82.0
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 3.3e-181 638.6 428 73.8
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 5.2e-179 631.3 386 78.2
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 2.0e-178 629.4 426 73.7
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 2.0e-178 629.4 426 73.7
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 7.6e-178 627.5 414 74.6
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.7e-177 626.3 430 73.0
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 2.9e-177 625.5 405 76.5
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 1.4e-176 623.2 422 72.7
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 1.9e-176 622.9 456 69.1
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 2.4e-176 622.5 411 74.2
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 7.8e-175 617.5 429 73.0
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 1.0e-174 617.1 409 73.1
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 5.2e-171 604.7 405 72.8
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 2.6e-170 602.4 388 74.2
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 6.4e-169 597.8 420 74.5
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 2.3e-166 589.3 408 70.6
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 3.6e-164 582.0 413 73.8
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 2.4e-163 579.3 615 52.2
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.2e-162 577.0 413 71.9
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 1.3e-161 573.5 375 75.7
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 7.9e-159 564.3 517 56.9
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 3.3e-157 558.9 347 80.1
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 4.5e-154 548.5 366 71.6
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 9.9e-154 547.4 439 64.9
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 1.8e-150 536.6 334 78.4
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 2.5e-149 532.7 407 67.6
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 3.3e-149 532.3 407 66.8
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 2.8e-148 529.3 420 64.3
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 8.2e-148 527.7 407 66.6
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 1.3e-145 520.4 318 78.9
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 2.2e-145 519.6 338 75.7
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 3.9e-142 508.8 407 64.9
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 1.1e-141 507.3 318 78.6
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 7.4e-141 504.6 424 59.2
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.4e-139 499.6 409 62.8
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 2.6e-138 496.1 528 51.1
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 2.1e-135 486.5 408 56.9
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 1.0e-134 484.2 421 58.4
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 2.3e-134 483.0 318 73.9
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 3.3e-133 479.2 416 58.7
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.0e-126 457.6 429 59.0
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 7.4e-125 451.4 413 59.6
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 6.1e-119 431.8 313 70.0
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 3.9e-118 429.1 282 75.9
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 1.0e-113 414.5 261 75.5
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 2.2e-113 413.3 257 77.8
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 2.9e-105 386.3 264 72.0
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 1.8e-102 377.1 441 46.9
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 5.4e-99 365.5 301 64.1
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 1.5e-96 357.5 262 69.8
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 4.0e-94 349.4 317 58.4
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 6.1e-87 325.5 427 41.7
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 5.0e-81 305.8 202 74.3
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 5.6e-80 302.4 170 90.0
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.8e-78 297.4 456 39.0
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 1.3e-76 291.2 200 72.5
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 6.2e-63 245.7 200 62.0
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.9e-51 207.6 121 81.8
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 2.4e-51 207.2 410 33.9
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 5.1e-49 199.5 120 79.2
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 9.0e-46 188.7 115 79.1
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 7.6e-45 185.7 126 67.5
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 4.6e-42 176.4 103 83.5
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 2.5e-40 170.6 101 83.2
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 3.2e-35 153.7 76 94.7
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 3.0e-33 147.1 85 82.4
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 3.0e-33 147.1 85 82.4
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 1.8e-30 137.9 72 84.7
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 3.6e-18 97.1 61 73.8
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 1.0e-12 79.0 56 60.7
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 1.7e-12 78.2 205 25.9
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 2.5e-11 74.3 45 80.0
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 3.6e-10 70.5 46 80.4
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 3.6e-10 70.5 43 79.1
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 4.8e-07 60.1 78 47.4


User provided reference genes

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