Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 1.7e-160 570.9 839 100.0
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.1e-103 382.1 841 86.6
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 1.2e-89 335.5 229 73.4
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 2.7e-62 244.6 867 74.4
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.6e-54 218.8 864 71.5
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 8.0e-54 216.5 794 68.3
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.5e-52 212.2 794 70.4
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 2.0e-44 185.3 240 47.1
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 9.1e-42 176.4 185 50.3
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 7.7e-41 173.3 239 46.9
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 2.3e-40 171.8 161 55.3
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 2.3e-40 171.8 177 53.1
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 6.6e-40 170.2 152 54.6
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 2.1e-38 165.2 210 45.7
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 2.1e-38 165.2 236 44.1
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 4.7e-38 164.1 228 43.4
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 4.7e-38 164.1 185 46.5
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 1.4e-37 162.5 229 45.9
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 1.4e-37 162.5 229 45.9
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 1.8e-37 162.2 185 46.5
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 2.3e-37 161.8 176 49.4
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 8.9e-37 159.8 163 50.3
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 1.2e-36 159.5 725 76.6
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 3.4e-36 157.9 176 47.7
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 4.4e-36 157.5 229 45.0
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 7.5e-36 156.8 171 48.0
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 1.3e-35 156.0 233 43.8
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.3e-35 156.0 145 54.5
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 2.2e-35 155.2 189 43.9
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.2e-35 155.2 145 53.8
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 6.3e-35 153.7 225 43.1
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 1.4e-34 152.5 159 53.5
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.8e-34 152.1 145 53.1
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.8e-34 152.1 145 53.1
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.4e-34 151.8 170 50.6
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 3.2e-34 151.4 177 49.7
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 1.2e-33 149.4 174 48.3
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.6e-33 149.1 176 48.3
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 2.0e-33 148.7 229 37.6
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 3.5e-33 147.9 229 44.1
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 7.8e-33 146.7 147 53.7
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.7e-32 145.6 193 45.1
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.7e-32 145.6 155 51.6
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.3e-32 145.2 160 50.6
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 5.0e-32 144.1 166 49.4
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 5.0e-32 144.1 141 54.6
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 5.0e-32 144.1 135 54.8
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 6.6e-32 143.7 181 47.0
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 8.6e-32 143.3 146 51.4
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 8.6e-32 143.3 142 54.2
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 8.6e-32 143.3 188 45.7
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 4.3e-31 141.0 139 51.1
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 4.7e-30 137.5 191 42.9
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 8.0e-30 136.7 141 51.8
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.4e-29 136.0 145 49.0
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.8e-29 135.6 175 45.1
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 2.3e-29 135.2 201 40.3
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 3.1e-29 134.8 181 44.8
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 4.0e-29 134.4 185 40.5
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 5.2e-29 134.0 146 47.9
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 8.9e-29 133.3 180 42.2
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 2.6e-28 131.7 149 47.0
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 2.6e-28 131.7 140 48.6
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 9.8e-28 129.8 191 38.7
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.9e-27 128.3 170 46.5
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 2.9e-27 128.3 207 41.1
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 3.7e-27 127.9 144 45.1
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 4.9e-27 127.5 163 42.9
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 6.4e-27 127.1 181 44.8
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 1.1e-26 126.3 198 41.9
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.1e-26 126.3 161 42.9
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.4e-26 125.2 149 49.7
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 3.2e-26 124.8 186 39.8
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 1.2e-25 122.9 154 43.5
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 1.6e-25 122.5 167 46.1
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 2.0e-25 122.1 226 35.4
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.0e-25 122.1 178 41.0
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 2.7e-25 121.7 160 45.6
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 2.7e-25 121.7 141 47.5
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 3.5e-25 121.3 187 40.6
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 3.5e-25 121.3 154 42.9
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 3.5e-25 121.3 156 43.6
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 6.0e-25 120.6 183 40.4
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 2.3e-24 118.6 198 40.9
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 2.3e-24 118.6 194 37.6
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 3.9e-24 117.9 201 39.8
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.1e-23 116.3 199 36.2
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 1.5e-23 115.9 143 44.8
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 1.5e-23 115.9 167 43.1
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 2.5e-23 115.2 132 44.7
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 4.3e-23 114.4 201 38.3
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 5.6e-23 114.0 205 37.1
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 1.6e-22 112.5 146 41.8
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 4.7e-22 110.9 165 39.4
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 1.4e-21 109.4 177 36.2
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.3e-21 108.6 198 36.9
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 5.2e-21 107.5 147 41.5
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 5.2e-21 107.5 147 42.2
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 6.8e-21 107.1 99 57.6
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 1.2e-20 106.3 169 37.9
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 2.0e-20 105.5 169 36.1
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.0e-20 105.5 144 38.9
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 2.6e-20 105.1 144 38.9
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 5.8e-20 104.0 175 37.7
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 7.5e-20 103.6 189 34.9
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 8.3e-19 100.1 197 34.5
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 1.4e-18 99.4 229 32.8
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 5.4e-18 97.4 140 39.3
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 2.1e-17 95.5 215 33.0
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 4.6e-17 94.4 134 41.0
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 9.5e-15 86.7 197 32.5
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 9.5e-15 86.7 128 39.8
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 9.5e-15 86.7 182 30.2
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 6.2e-14 84.0 123 38.2
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 1.4e-13 82.8 75 57.3
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 5.2e-13 80.9 77 48.1
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 2.0e-12 79.0 80 48.8
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 2.2e-11 75.5 92 42.4
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 8.3e-11 73.6 140 36.4
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 8.3e-11 73.6 89 39.3
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 1.4e-10 72.8 186 31.7
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 2.4e-10 72.0 161 33.5
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 4.1e-10 71.2 140 34.3
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 7.1e-10 70.5 156 32.7
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 9.2e-10 70.1 76 48.7
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 2.1e-09 68.9 88 39.8
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 2.7e-09 68.6 161 32.9
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 2.7e-09 68.6 161 32.9
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 2.7e-09 68.6 161 32.9
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 2.7e-09 68.6 192 28.6
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.0e-08 66.6 71 45.1
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 2.3e-08 65.5 80 41.2
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 5.1e-08 64.3 119 27.7
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.6e-08 63.9 132 27.3
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 8.6e-08 63.5 97 39.2
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 1.1e-07 63.2 59 45.8
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 1.5e-07 62.8 195 28.2
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.9e-07 62.4 68 42.6
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 1.9e-07 62.4 89 38.2
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 2.5e-07 62.0 152 25.0
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 4.3e-07 61.2 121 35.5
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 4.3e-07 61.2 95 35.8
Zm00001eb140410 Zea mays HOM05D026208 ORTHO05D030341 4.3e-07 61.2 144 26.4
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 5.6e-07 60.8 143 27.3
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 5.6e-07 60.8 70 40.0
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 7.3e-07 60.5 76 42.1
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 1.6e-06 59.3 130 32.3
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.6e-06 59.3 133 24.1
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.6e-06 59.3 133 24.1
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.6e-06 59.3 133 24.1
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.6e-06 58.2 133 24.1
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.6e-06 58.2 133 24.1
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 4.7e-06 57.8 78 39.7
Glyma.18G262450 Glycine max HOM05D004824 ORTHO05D003903 6.2e-06 57.4 37 70.3


User provided reference genes

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