Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 2.2e-80 302.8 223 100.0
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 2.5e-55 219.5 135 85.2
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 9.5e-55 217.6 135 85.2
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 2.1e-54 216.5 135 83.7
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 4.0e-53 212.2 135 80.7
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.0e-53 212.2 135 80.7
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.8e-53 211.5 135 80.0
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.2e-52 210.7 135 80.0
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.2e-52 210.7 135 80.0
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 9.2e-50 201.1 135 79.3
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 1.2e-49 200.7 135 79.3
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.6e-49 200.3 135 76.3
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.7e-49 199.5 135 78.5
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 6.0e-49 198.4 135 78.5
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 1.3e-48 197.2 135 79.3
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 6.6e-48 194.9 135 76.3
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 8.6e-48 194.5 135 77.0
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 8.6e-48 194.5 135 77.0
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 1.5e-47 193.7 135 80.0
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 1.5e-47 193.7 135 80.0
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 2.5e-47 193.0 135 77.8
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 2.5e-47 193.0 135 77.8
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 4.3e-47 192.2 135 75.6
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 4.3e-47 192.2 135 77.8
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 4.3e-47 192.2 135 75.6
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 4.3e-47 192.2 135 77.0
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 5.6e-47 191.8 134 75.4
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 7.3e-47 191.4 135 76.3
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 9.5e-47 191.0 135 77.0
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 9.5e-47 191.0 135 76.3
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 9.5e-47 191.0 135 75.6
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.6e-46 190.3 133 76.7
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.1e-46 189.9 135 75.6
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 2.1e-46 189.9 135 73.3
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 3.6e-46 189.1 137 76.6
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.4e-45 187.2 135 75.6
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 1.8e-45 186.8 135 74.8
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 1.8e-45 186.8 135 74.8
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.8e-45 186.8 135 73.3
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 2.3e-45 186.4 135 75.6
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 2.3e-45 186.4 133 77.4
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 3.1e-45 186.0 135 73.3
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 4.0e-45 185.7 135 73.3
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 6.8e-45 184.9 135 71.9
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 6.8e-45 184.9 135 71.9
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 1.5e-44 183.7 135 70.4
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 2.0e-44 183.3 135 74.8
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 2.6e-44 183.0 135 70.4
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.6e-44 183.0 135 72.6
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.4e-44 182.6 134 72.4
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 3.4e-44 182.6 135 71.1
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 3.4e-44 182.6 135 71.1
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 3.4e-44 182.6 134 73.1
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 7.6e-44 181.4 135 73.3
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 9.9e-44 181.0 135 71.9
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.3e-43 180.6 135 74.1
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 1.7e-43 180.3 135 71.9
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 2.9e-43 179.5 132 69.7
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 3.8e-43 179.1 135 70.4
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 8.4e-43 177.9 132 71.2
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 3.2e-42 176.0 135 68.1
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 3.2e-42 176.0 135 70.4
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 4.1e-42 175.6 135 70.4
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 7.1e-42 174.9 135 69.6
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 7.1e-42 174.9 136 70.6
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 9.2e-42 174.5 132 66.7
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 2.1e-41 173.3 135 69.6
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 4.6e-41 172.2 134 69.4
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 4.6e-41 172.2 132 68.2
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.3e-40 170.6 133 67.7
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 2.3e-40 169.9 135 67.4
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 2.3e-40 169.9 135 66.7
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 8.6e-40 167.9 135 66.7
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 1.5e-39 167.2 135 65.9
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.9e-39 166.8 134 67.9
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 1.9e-39 166.8 132 67.4
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.3e-39 165.6 135 65.9
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 1.2e-38 164.1 134 66.4
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.6e-38 163.7 135 61.5
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 1.6e-38 163.7 134 64.2
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 1.6e-38 163.7 134 64.2
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 1.6e-38 163.7 131 67.9
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.8e-38 162.9 135 66.7
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 3.6e-38 162.5 134 64.9
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 4.7e-38 162.2 134 65.7
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 4.7e-38 162.2 134 65.7
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 4.7e-38 162.2 134 65.7
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 4.7e-38 162.2 134 65.7
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 4.7e-38 162.2 134 65.7
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 6.2e-38 161.8 131 67.2
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.4e-37 160.6 135 65.2
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 1.4e-37 160.6 135 63.7
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.8e-37 160.2 127 66.9
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 3.1e-37 159.5 134 64.2
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 3.1e-37 159.5 134 64.2
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 3.1e-37 159.5 134 64.9
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 4.0e-37 159.1 134 64.2
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 4.0e-37 159.1 134 62.7
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 4.0e-37 159.1 135 63.7
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 5.2e-37 158.7 134 63.4
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 6.9e-37 158.3 134 63.4
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 6.9e-37 158.3 131 64.9
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 8.9e-37 157.9 132 62.9
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.6e-36 156.4 135 62.2
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 7.6e-36 154.8 134 61.9
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 9.3e-34 147.9 114 71.1
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.6e-33 147.1 136 60.3
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 3.5e-33 146.0 132 60.6
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 8.7e-32 141.4 126 63.5
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.3e-30 137.5 135 57.0
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.6e-30 137.1 135 60.0
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.3e-29 132.1 132 59.1
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-28 131.0 135 58.5
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 3.4e-28 129.4 135 56.3
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 3.8e-27 125.9 137 54.0
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 8.4e-27 124.8 133 57.1
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 2.4e-26 123.2 133 56.4
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-26 123.2 137 55.5
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 2.4e-26 123.2 137 55.5
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 3.2e-26 122.9 137 53.3
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 3.2e-26 122.9 137 53.3
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 4.2e-26 122.5 133 56.4
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 3.5e-25 119.4 136 50.7
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 3.5e-25 119.4 136 50.7
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 3.5e-25 119.4 136 50.7
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 4.6e-25 119.0 97 66.0
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 1.0e-24 117.9 136 50.7
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 1.8e-24 117.1 137 53.3
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 5.1e-24 115.5 115 58.3
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 5.6e-23 112.1 133 51.1
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 1.3e-22 110.9 133 51.1
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 3.6e-22 109.4 67 83.6
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 8.1e-22 108.2 133 50.4
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.8e-21 107.1 99 61.6
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 7.6e-20 101.7 137 48.9
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 7.6e-20 101.7 137 48.9
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.3e-16 90.1 68 72.1
FvH4_7g19390 Fragaria vesca HOM05D036880 ORTHO05D006491 1.1e-10 71.2 77 54.5
FvH4_6g17050 Fragaria vesca HOM05D036880 ORTHO05D045991 1.6e-06 57.4 48 62.5
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 2.1e-06 57.0 134 32.8
FAN23G0121 Fragaria x ananassa HOM05D066285 ORTHO05D006491 8.2e-06 55.1 61 50.8


User provided reference genes

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