Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 4.5e-302 1040.4 514 100.0
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 5.5e-239 830.9 520 79.8
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 1.4e-218 763.1 514 74.3
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 1.0e-213 746.9 515 72.4
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 5.4e-194 681.4 475 72.4
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 9.1e-194 680.6 504 68.8
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 5.2e-189 664.8 467 71.5
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 2.3e-181 639.4 520 59.8
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.7e-177 625.9 467 68.5
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 1.1e-175 620.5 537 60.0
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 1.2e-169 600.5 517 60.5
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 3.7e-163 578.9 463 62.6
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.1e-159 567.4 516 56.6
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 4.7e-158 562.0 516 56.8
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 4.0e-157 558.9 524 54.2
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 4.9e-155 552.0 515 55.0
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 9.6e-151 537.7 516 53.3
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 1.4e-146 523.9 511 53.8
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 6.0e-145 518.5 514 52.7
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 2.0e-140 503.4 514 52.5
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 1.3e-139 500.7 513 52.0
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 1.1e-138 497.7 517 51.6
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 1.1e-138 497.7 878 37.4
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 1.9e-138 496.9 514 52.7
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 2.4e-138 496.5 512 51.2
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 3.5e-137 492.7 519 52.4
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 6.0e-137 491.9 514 51.2
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 6.7e-136 488.4 494 53.0
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 5.6e-135 485.3 519 50.3
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 7.4e-135 485.0 522 50.0
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 1.4e-133 480.7 511 50.9
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 1.4e-133 480.7 646 44.6
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.8e-133 480.3 514 51.8
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 4.0e-133 479.2 515 51.1
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 5.3e-133 478.8 513 50.1
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 6.9e-133 478.4 512 50.6
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 3.8e-131 472.6 523 49.3
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 9.3e-130 468.0 518 49.6
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 2.7e-129 466.5 518 49.6
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 6.0e-129 465.3 518 49.0
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 6.0e-129 465.3 513 48.7
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 3.0e-128 463.0 518 48.1
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 3.8e-123 446.0 419 53.9
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 1.6e-121 440.7 510 47.8
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 7.9e-121 438.3 513 47.6
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 3.3e-119 433.0 524 46.2
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 4.3e-119 432.6 513 45.4
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 4.3e-119 432.6 516 48.3
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 4.3e-119 432.6 517 48.2
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 3.7e-118 429.5 510 47.5
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 8.2e-118 428.3 359 59.6
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 2.6e-116 423.3 528 44.9
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 1.7e-115 420.6 455 50.3
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 1.1e-114 417.9 534 45.9
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 2.5e-114 416.8 531 45.6
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 3.2e-114 416.4 520 44.2
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 1.2e-113 414.5 526 45.6
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 1.2e-113 414.5 515 45.8
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 1.6e-113 414.1 528 46.0
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 6.1e-113 412.1 511 43.8
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 7.9e-113 411.8 530 45.7
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 1.8e-112 410.6 526 46.0
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 1.8e-112 410.6 521 46.1
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 1.8e-112 410.6 673 38.6
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 2.3e-112 410.2 522 46.4
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 3.3e-111 406.4 513 44.6
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 9.7e-111 404.8 517 46.2
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 1.2e-108 397.9 528 47.2
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 1.2e-108 397.9 511 42.7
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 1.5e-108 397.5 442 50.0
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 2.7e-105 386.7 513 42.9
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 3.6e-105 386.3 512 45.3
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 2.0e-103 380.6 475 45.1
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 7.4e-103 378.6 406 49.5
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 7.7e-100 368.6 442 48.0
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 2.9e-99 366.7 286 66.1
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 9.4e-98 361.7 516 40.7
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 8.0e-97 358.6 520 40.6
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 2.3e-96 357.1 527 39.5
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 1.3e-94 351.3 516 38.8
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.7e-94 350.9 516 39.9
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 1.7e-94 350.9 402 49.8
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 1.7e-91 340.9 370 49.7
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 1.6e-89 334.3 398 45.7
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 1.5e-87 327.8 273 62.6
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 1.4e-85 321.2 394 43.9
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 1.3e-83 314.7 485 42.3
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 4.5e-76 289.7 334 48.8
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 9.8e-71 271.9 546 33.3
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 1.3e-67 261.5 464 37.7
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 1.8e-64 251.1 342 44.2
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 2.6e-63 247.3 302 46.0
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 4.0e-56 223.4 169 67.5
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 1.4e-53 214.9 459 33.6
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 6.0e-52 209.5 265 46.8
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 4.3e-50 203.4 333 38.4
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 7.3e-50 202.6 511 29.4
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 6.2e-49 199.5 282 43.6
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 3.7e-46 190.3 280 40.4
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.1e-45 188.7 152 65.1
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 7.1e-37 159.5 115 67.0
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 2.7e-36 157.5 139 55.4
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 2.5e-34 151.0 574 26.5
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 4.3e-34 150.2 310 35.5
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 2.1e-33 147.9 133 54.9
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 1.5e-31 141.7 530 25.5
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 1.9e-29 134.8 260 32.3
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 9.3e-29 132.5 103 54.4
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 6.0e-28 129.8 206 37.4
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 2.5e-26 124.4 173 38.2
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 1.8e-24 118.2 257 34.6
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 4.5e-23 113.6 136 47.1
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 1.3e-19 102.1 135 40.0
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 9.6e-18 95.9 127 40.2
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 6.2e-17 93.2 145 37.9
CiPaw.09G139700 Carya illinoinensis HOM05D005725 ORTHO05D007531 3.1e-16 90.9 141 42.6
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 2.6e-15 87.8 138 37.0
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 2.6e-15 87.8 138 37.0
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 3.4e-15 87.4 90 51.1
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 2.9e-14 84.3 114 38.6
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 2.9e-14 84.3 114 38.6
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 2.9e-14 84.3 114 38.6
Atru.chr1.2967 Acer truncatum HOM05D005725 ORTHO05D007531 4.9e-14 83.6 107 48.6
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 2.7e-12 77.8 74 51.4
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 4.3e-10 70.5 132 31.1
SHI12772 Sapria himalayana HOM05D005725 ORTHO05D007531 6.3e-09 66.6 79 38.0
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 6.9e-08 63.2 61 44.3
Gohir.A08G150800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 5.9e-07 60.1 85 40.0
SEGI_16346 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 8.5e-06 56.2 144 31.2


User provided reference genes

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