Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 4.3e-150 534.6 272 100.0
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 1.4e-116 423.3 246 85.8
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.9e-113 412.9 247 82.6
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 3.2e-113 412.1 247 83.8
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.6e-112 409.8 247 82.2
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 6.7e-111 404.4 247 81.0
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 6.7e-111 404.4 247 81.0
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.1e-108 397.1 247 80.2
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 5.0e-106 388.3 246 77.6
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 2.8e-101 372.5 247 75.3
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.4e-100 370.2 245 76.3
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 3.1e-100 369.0 247 72.5
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 2.0e-99 366.3 244 74.6
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 2.0e-99 366.3 245 73.1
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 2.6e-99 365.9 245 73.9
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 4.5e-99 365.2 247 73.3
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 4.5e-99 365.2 245 74.3
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 5.9e-99 364.8 246 71.1
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 7.7e-99 364.4 245 74.7
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 7.7e-99 364.4 245 75.1
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 6.5e-98 361.3 244 73.8
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 6.5e-98 361.3 245 73.5
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 6.5e-98 361.3 245 73.5
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 1.4e-97 360.1 245 73.5
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 5.5e-97 358.2 244 73.0
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 9.4e-97 357.5 245 71.4
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 9.4e-97 357.5 244 73.0
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.6e-96 356.7 238 76.5
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.1e-96 356.3 247 72.9
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 2.1e-96 356.3 245 72.7
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 2.7e-96 355.9 249 70.7
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 2.0e-94 349.7 256 68.8
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 2.0e-94 349.7 245 71.4
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.6e-94 349.4 247 71.3
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.3e-94 349.0 256 68.8
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 4.4e-94 348.6 244 70.1
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 9.7e-94 347.4 247 70.9
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 9.7e-94 347.4 247 71.7
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.3e-93 347.1 244 70.5
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 1.7e-93 346.7 244 70.9
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.8e-93 345.9 247 69.2
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 4.8e-93 345.1 244 70.9
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.1e-92 344.0 244 70.5
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.1e-92 344.0 247 69.6
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.4e-92 343.6 247 68.0
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.2e-91 340.5 245 70.2
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 2.0e-91 339.7 244 70.1
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 2.6e-91 339.3 244 71.3
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 2.6e-91 339.3 244 71.3
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 2.6e-91 339.3 247 67.2
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 3.5e-91 339.0 244 71.3
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 3.5e-91 339.0 267 66.7
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 5.9e-91 338.2 244 70.9
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 7.7e-91 337.8 244 70.1
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 7.7e-91 337.8 244 69.3
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 2.2e-90 336.3 244 69.7
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 2.2e-90 336.3 246 67.1
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 3.8e-90 335.5 244 69.7
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 3.8e-90 335.5 244 69.7
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.8e-90 335.5 245 69.4
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.8e-90 335.5 245 69.4
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 5.0e-90 335.1 244 69.7
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 6.5e-90 334.7 244 69.7
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 8.5e-90 334.3 244 69.7
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 1.1e-89 334.0 247 65.2
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 1.9e-89 333.2 247 67.6
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 4.2e-89 332.0 217 76.0
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 5.5e-89 331.6 244 69.3
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 7.2e-89 331.3 247 66.0
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 6.1e-88 328.2 245 68.2
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 8.0e-88 327.8 244 67.2
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 8.0e-88 327.8 244 66.8
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.4e-87 327.0 247 65.6
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 1.8e-87 326.6 244 69.7
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.8e-87 326.6 249 66.7
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.8e-87 326.6 244 67.2
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 2.3e-87 326.2 245 65.3
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 3.0e-87 325.9 245 68.6
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 3.0e-87 325.9 249 66.7
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 8.8e-87 324.3 245 63.3
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.6e-86 322.8 245 66.9
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 4.4e-86 322.0 249 66.7
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 1.7e-85 320.1 245 64.1
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 2.2e-85 319.7 244 67.6
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 3.7e-85 318.9 244 66.4
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.0e-83 313.2 249 65.9
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 7.7e-83 311.2 280 58.2
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 1.0e-82 310.8 245 65.3
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 8.0e-80 301.2 244 62.7
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 8.0e-80 301.2 228 69.3
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 1.0e-79 300.8 292 57.5
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 8.3e-77 291.2 278 56.5
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.4e-76 290.4 247 62.8
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 2.4e-76 289.7 245 61.6
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 9.1e-76 287.7 244 59.4
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 9.1e-76 287.7 244 61.9
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 5.9e-75 285.0 148 94.6
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 8.0e-72 274.6 245 59.2
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 2.8e-69 266.2 245 55.9
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 3.5e-67 259.2 245 56.3
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 2.9e-66 256.1 245 53.9
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.6e-64 250.4 176 67.0
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 2.6e-62 243.0 246 52.4
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 4.1e-60 235.7 255 51.8
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 9.8e-54 214.5 249 46.6
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 6.4e-53 211.8 266 45.1
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.9e-52 210.3 249 45.8
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.0e-50 204.5 247 46.6
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 5.0e-50 202.2 167 64.7
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.5e-49 200.7 140 67.1
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.5e-49 200.7 140 67.1
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.4e-47 194.1 107 85.0
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 1.9e-44 183.7 106 78.3
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 1.6e-43 180.6 204 55.9
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 8.1e-40 168.3 245 44.9
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 5.8e-38 162.2 143 60.1
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.4e-31 140.2 122 59.8
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.7e-29 134.0 120 57.5
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 2.9e-29 133.3 79 77.2
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 1.2e-27 127.9 271 33.9
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.1e-25 121.3 79 68.4
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 4.3e-25 119.4 259 35.1
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 4.3e-25 119.4 254 32.3
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.4e-23 114.4 131 48.1
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.7e-19 100.1 76 63.2
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 1.5e-17 94.4 252 29.0
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 1.5e-17 94.4 60 73.3
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 1.7e-13 80.9 59 67.8
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 9.3e-12 75.1 96 49.0
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 9.3e-12 75.1 65 60.0
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 3.5e-11 73.2 37 81.1
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 5.1e-10 69.3 66 53.0
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 1.6e-08 64.3 85 47.1


User provided reference genes

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