Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 7.8e-176 620.5 357 100.0
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 7.9e-152 540.8 360 78.6
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 1.3e-149 533.5 360 76.7
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 4.0e-140 501.9 368 71.7
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 4.3e-134 481.9 375 69.3
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 8.2e-133 477.6 366 69.4
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 1.2e-131 473.8 375 68.8
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.6e-131 472.6 375 68.5
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 5.9e-131 471.5 375 68.5
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.1e-129 467.2 375 68.0
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.2e-128 463.8 368 70.9
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.6e-128 463.4 368 71.2
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 2.7e-128 462.6 376 67.6
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 6.1e-128 461.5 386 67.9
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.9e-126 456.4 354 67.8
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.9e-126 456.4 392 65.1
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 5.7e-126 454.9 374 66.8
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 4.1e-124 448.7 372 67.7
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 4.1e-124 448.7 376 71.0
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 1.2e-123 447.2 376 65.4
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 1.2e-123 447.2 396 63.9
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.3e-122 443.7 390 64.1
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.3e-122 443.7 353 67.1
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 2.2e-122 443.0 390 66.7
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 6.5e-122 441.4 372 69.4
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 8.5e-122 441.0 384 64.1
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 1.1e-121 440.7 372 63.2
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.2e-120 437.2 378 65.3
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 2.1e-120 436.4 412 61.7
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 4.6e-120 435.3 422 59.7
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 6.1e-120 434.9 377 62.1
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.9e-120 434.5 353 66.6
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 3.9e-119 432.2 380 62.9
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 2.6e-118 429.5 344 70.3
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 3.3e-118 429.1 376 62.8
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 5.7e-118 428.3 366 64.8
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 7.4e-118 427.9 348 68.4
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 1.7e-117 426.8 374 63.9
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 6.3e-117 424.9 348 67.5
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.1e-116 422.2 350 69.1
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 6.9e-116 421.4 352 65.6
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 6.9e-116 421.4 413 59.6
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 9.1e-116 421.0 344 68.6
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.2e-115 420.6 376 62.5
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 2.0e-115 419.9 371 71.7
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.0e-115 419.9 383 59.5
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 2.6e-115 419.5 380 60.8
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 3.4e-115 419.1 374 66.8
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 5.9e-115 418.3 349 68.8
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 5.9e-115 418.3 383 66.6
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 5.9e-115 418.3 377 62.6
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.7e-114 416.8 388 60.6
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 2.2e-114 416.4 354 64.1
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 2.9e-114 416.0 368 65.5
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.9e-114 416.0 393 60.3
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.4e-113 413.7 368 65.2
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.9e-113 413.3 370 61.1
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 2.5e-113 412.9 374 66.0
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 1.2e-112 410.6 356 61.5
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 1.2e-112 410.6 353 64.0
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.0e-111 407.5 353 68.8
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.4e-111 407.1 377 60.5
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 2.3e-111 406.4 373 66.5
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.9e-111 405.6 351 62.7
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 5.2e-111 405.2 373 61.1
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 5.2e-111 405.2 397 63.7
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 6.7e-111 404.8 374 61.2
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 6.7e-111 404.8 371 61.5
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.1e-110 404.1 355 62.3
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 9.7e-110 401.0 431 59.2
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.8e-109 399.4 395 59.0
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.8e-109 399.4 368 61.1
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 3.7e-109 399.1 353 67.1
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 3.1e-108 396.0 372 63.2
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 5.3e-108 395.2 441 53.5
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 3.5e-107 392.5 376 60.9
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 3.5e-107 392.5 382 60.5
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 7.7e-107 391.3 372 62.6
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.3e-106 390.6 350 62.0
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 6.5e-106 388.3 378 59.3
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 8.5e-106 387.9 357 62.2
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 1.1e-105 387.5 372 63.7
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.9e-105 386.7 361 57.9
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 3.6e-104 382.5 361 65.4
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 1.0e-103 380.9 364 60.4
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 1.0e-103 380.9 380 60.5
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 2.3e-103 379.8 368 62.5
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 2.6e-102 376.3 352 60.2
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 9.7e-102 374.4 369 59.3
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 1.3e-101 374.0 347 61.7
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 7.0e-100 368.2 375 61.9
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 7.0e-100 368.2 355 60.8
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.2e-99 367.5 358 62.8
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 1.3e-98 364.0 387 62.5
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 1.3e-98 364.0 370 59.7
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 2.2e-98 363.2 383 56.4
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.9e-98 362.8 410 57.8
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 9.4e-97 357.8 364 57.1
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 1.6e-96 357.1 356 59.8
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.8e-95 353.6 325 62.8
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 5.2e-95 352.1 351 63.0
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 1.2e-94 350.9 360 61.4
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 3.7e-93 345.9 364 60.2
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 8.3e-93 344.7 402 56.0
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 8.3e-93 344.7 367 63.2
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 8.3e-93 344.7 367 63.2
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 2.4e-92 343.2 367 62.7
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.4e-92 343.2 349 61.0
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 5.9e-91 338.6 340 58.8
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 7.7e-91 338.2 343 57.1
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 2.9e-90 336.3 373 57.9
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.5e-89 333.2 346 55.5
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 4.2e-89 332.4 494 49.2
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 2.3e-87 326.6 343 55.4
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 2.6e-86 323.2 266 68.0
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 2.6e-86 323.2 281 62.3
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 9.8e-86 321.2 390 56.2
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 4.1e-84 315.8 369 53.7
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 7.0e-84 315.1 339 59.6
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.6e-83 313.9 318 57.9
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 5.9e-83 312.0 340 54.4
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 3.8e-82 309.3 483 48.7
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.0e-79 301.2 312 57.4
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 1.4e-76 290.8 402 50.7
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 3.0e-74 283.1 403 53.1
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 4.3e-73 279.3 342 49.4
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 4.7e-72 275.8 406 47.5
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 6.2e-72 275.4 277 56.0
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 9.2e-68 261.5 167 79.0
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 3.4e-62 243.0 271 54.2
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 8.3e-61 238.4 366 48.4
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.5e-57 227.6 301 55.1
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.5e-57 227.6 301 55.1
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.5e-54 217.6 165 66.1
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.7e-50 204.1 248 51.2
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 3.0e-50 203.4 98 95.9
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 5.1e-50 202.6 172 68.0
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.0e-47 193.0 99 91.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.0e-47 193.0 99 91.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 1.9e-44 184.1 145 61.4
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 1.0e-42 178.3 298 44.3
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 6.2e-40 169.1 93 86.0
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 8.1e-40 168.7 685 27.2
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.6e-35 154.5 208 51.0
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.3e-32 144.8 89 83.1
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 8.1e-32 142.1 210 45.7
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 4.9e-29 132.9 222 49.1
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.6e-27 126.3 84 76.2
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 1.0e-26 125.2 70 80.0
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 4.8e-24 116.3 349 30.7
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 2.4e-23 114.0 94 55.3
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.2e-22 111.7 163 46.6
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 5.8e-22 109.4 117 46.2
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.7e-21 107.8 65 76.9
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 3.8e-21 106.7 76 64.5
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 1.4e-20 104.8 82 63.4
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 3.8e-13 80.1 63 61.9
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 6.3e-08 62.8 74 48.6


User provided reference genes

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