Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 2.6e-50 201.8 106 100.0
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.7e-41 171.4 106 83.0
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 6.3e-41 170.6 106 83.0
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.3e-41 170.6 106 83.0
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 1.1e-40 169.9 106 83.0
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 5.4e-40 167.5 106 81.1
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.4e-40 167.5 106 81.1
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.2e-39 166.4 106 83.0
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.5e-37 159.5 106 77.4
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 9.5e-37 156.8 106 74.5
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.4e-35 152.9 105 73.3
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.4e-35 152.9 103 73.8
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 3.0e-35 151.8 106 72.6
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 4.0e-35 151.4 106 71.7
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.5e-34 149.4 103 71.8
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.5e-34 149.4 103 71.8
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 2.0e-34 149.1 94 83.0
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 2.6e-34 148.7 89 80.9
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 3.4e-34 148.3 103 73.8
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 3.4e-34 148.3 105 72.4
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 5.7e-34 147.5 103 71.8
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 5.7e-34 147.5 103 70.9
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 9.8e-34 146.7 103 70.9
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 9.8e-34 146.7 105 68.6
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 9.8e-34 146.7 105 71.4
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 9.8e-34 146.7 105 71.4
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 9.8e-34 146.7 103 70.9
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.3e-33 146.4 106 74.5
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.7e-33 146.0 105 69.5
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.7e-33 146.0 105 70.5
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 1.7e-33 146.0 92 84.8
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 1.7e-33 146.0 106 71.7
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 2.9e-33 145.2 106 71.7
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 2.9e-33 145.2 103 69.9
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 4.9e-33 144.4 106 73.6
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 6.4e-33 144.1 105 69.5
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 6.4e-33 144.1 105 67.6
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 6.4e-33 144.1 106 67.0
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 8.3e-33 143.7 114 69.3
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.1e-32 143.3 106 72.6
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.8e-32 142.5 103 68.9
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 1.8e-32 142.5 106 69.8
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 2.4e-32 142.1 107 71.0
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 3.2e-32 141.7 107 71.0
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 3.2e-32 141.7 105 70.5
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 4.1e-32 141.4 106 67.9
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 4.1e-32 141.4 105 67.6
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 5.4e-32 141.0 103 69.9
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 5.4e-32 141.0 105 71.4
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 7.0e-32 140.6 106 67.9
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 3.5e-31 138.3 103 68.9
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 3.5e-31 138.3 103 68.9
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 3.5e-31 138.3 106 68.9
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 4.6e-31 137.9 106 67.9
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 5.9e-31 137.5 106 68.9
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 1.0e-30 136.7 108 68.5
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.3e-30 136.3 108 66.7
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.3e-30 135.6 106 67.9
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 5.0e-30 134.4 105 63.8
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 6.6e-30 134.0 108 66.7
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 6.6e-30 134.0 107 68.2
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 66.0
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 8.6e-30 133.7 106 64.2
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.1e-29 133.3 107 65.4
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-29 133.3 110 66.4
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 1.1e-29 133.3 119 63.0
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.5e-29 132.9 107 65.4
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.5e-29 132.9 105 64.8
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.9e-29 132.5 105 66.7
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 1.9e-29 132.5 106 64.2
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 2.5e-29 132.1 106 62.3
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.5e-29 132.1 106 64.2
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 5.6e-29 131.0 105 65.7
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 5.6e-29 131.0 106 63.2
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.6e-29 131.0 106 62.3
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 5.6e-29 131.0 106 62.3
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 5.6e-29 131.0 114 60.5
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 7.3e-29 130.6 106 62.3
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 7.3e-29 130.6 106 62.3
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 106 62.3
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 9.5e-29 130.2 106 62.3
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 9.5e-29 130.2 106 62.3
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 9.5e-29 130.2 106 62.3
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.2e-28 129.8 105 61.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.2e-28 129.8 105 63.8
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 1.2e-28 129.8 104 66.3
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 1.2e-28 129.8 96 65.6
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.6e-28 129.4 106 62.3
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.6e-28 129.4 106 61.3
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 3.6e-28 128.3 106 62.3
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 3.6e-28 128.3 107 62.6
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.4e-27 126.3 107 64.5
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.4e-27 126.3 107 64.5
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.4e-27 126.3 106 63.2
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.4e-27 126.3 84 72.6
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.8e-27 125.9 106 65.1
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 3.1e-27 125.2 103 63.1
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 3.1e-27 125.2 127 57.5
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 6.8e-27 124.0 105 60.0
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 8.9e-27 123.6 103 62.1
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 8.9e-27 123.6 106 65.1
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 8.9e-27 123.6 104 60.6
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.0e-26 122.5 91 63.7
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 2.0e-26 122.5 92 68.5
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 2.0e-26 122.5 93 69.9
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 4.4e-26 121.3 105 62.9
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.3e-25 119.8 124 54.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.7e-25 119.4 103 62.1
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 2.2e-25 119.0 92 67.4
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 6.4e-25 117.5 99 58.6
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 8.3e-25 117.1 103 57.3
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.4e-24 116.3 102 56.9
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 2.4e-24 115.5 106 56.6
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.2e-24 115.2 105 59.0
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 4.1e-24 114.8 107 58.9
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 5.4e-24 114.4 105 57.1
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 1.2e-23 113.2 85 62.4
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 3.5e-23 111.7 105 56.2
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 3.5e-23 111.7 74 77.0
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 6.0e-23 110.9 105 54.3
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 7.8e-23 110.5 105 58.1
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.3e-22 109.8 107 57.0
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.3e-22 109.8 88 62.5
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.7e-22 109.4 105 58.1
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.9e-22 108.2 88 61.4
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.9e-22 108.2 105 57.1
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.1e-21 106.7 107 52.3
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.5e-21 105.5 99 56.6
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 7.3e-21 104.0 103 55.3
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 6.2e-20 100.9 92 57.6
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 4.0e-19 98.2 74 68.9
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 5.2e-19 97.8 74 66.2
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.8e-18 94.4 76 71.1
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 4.1e-16 88.2 76 68.4
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 4.1e-16 88.2 76 65.8
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 9.2e-16 87.0 71 64.8
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.2e-15 86.7 83 54.2
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 6.0e-15 84.3 71 60.6
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.3e-14 83.2 96 46.9
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.3e-14 83.2 57 70.2
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.0e-14 82.0 61 67.2
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 5.6e-13 77.8 100 44.0
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 7.3e-13 77.4 74 62.2
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 8.9e-11 70.5 84 53.6
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.6e-10 68.9 70 64.3
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 7.1e-08 60.8 69 46.4
FAN19G2356 Fragaria x ananassa HOM05D029494 ORTHO05D035663 2.3e-06 55.8 42 71.4


User provided reference genes

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