Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.0e-165 586.6 296 100.0
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 3.8e-152 541.6 296 90.2
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 6.3e-147 524.2 296 88.9
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 4.1e-146 521.5 296 88.5
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 7.7e-145 517.3 296 87.8
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.5e-143 512.3 296 86.8
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 9.1e-138 493.8 323 79.9
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 7.7e-137 490.7 290 81.0
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 2.2e-136 489.2 296 81.1
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 2.9e-136 488.8 296 80.7
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 6.1e-134 481.1 295 81.0
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 8.0e-134 480.7 294 80.6
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.2e-132 476.9 290 82.8
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 3.1e-130 468.8 296 78.7
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.6e-129 466.5 291 74.9
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 7.7e-129 464.2 290 76.6
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 1.9e-127 459.5 292 76.7
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 2.5e-127 459.1 296 75.7
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.6e-126 456.4 294 76.9
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.8e-126 455.7 290 76.6
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 1.8e-125 453.0 296 74.7
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 6.8e-125 451.1 294 76.2
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.6e-124 449.1 292 74.3
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 4.4e-124 448.4 293 73.7
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 9.8e-124 447.2 294 75.5
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.9e-123 445.7 294 75.2
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 3.7e-123 445.3 290 72.8
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 6.4e-123 444.5 294 74.8
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.8e-122 443.0 309 70.2
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 1.2e-121 440.3 292 74.3
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 2.3e-120 436.0 290 70.7
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 1.5e-119 433.3 290 70.3
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 7.3e-119 431.0 306 69.6
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.6e-118 429.9 295 71.2
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.4e-117 426.8 290 71.7
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 4.0e-117 425.2 292 71.6
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 1.2e-116 423.7 291 70.1
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.5e-116 423.3 290 71.0
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 4.9e-115 418.3 290 70.3
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 1.1e-114 417.2 295 70.5
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 2.4e-114 416.0 290 69.7
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 3.2e-114 415.6 292 70.9
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 2.0e-113 412.9 295 69.8
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 2.0e-113 412.9 292 70.2
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 2.7e-113 412.5 292 69.2
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 6.0e-113 411.4 290 69.0
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.3e-112 410.2 290 69.7
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.7e-112 409.8 292 68.5
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 2.3e-112 409.5 293 68.6
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 3.0e-112 409.1 296 69.9
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 3.9e-112 408.7 290 67.6
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 5.0e-112 408.3 290 67.2
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 5.0e-112 408.3 290 67.2
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 2.8e-110 402.5 307 64.5
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.8e-110 402.5 294 66.3
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 2.8e-110 402.5 298 66.4
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 2.3e-109 399.4 330 63.0
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 6.8e-109 397.9 290 67.2
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 6.8e-109 397.9 290 69.7
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.5e-108 396.7 276 72.1
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 2.6e-108 396.0 288 68.8
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 3.4e-108 395.6 293 65.9
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 3.7e-107 392.1 268 72.4
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 8.3e-107 391.0 293 64.5
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 8.3e-107 391.0 294 66.3
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 5.4e-106 388.3 290 65.9
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 6.6e-104 381.3 239 77.0
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 1.9e-103 379.8 298 61.7
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 2.5e-103 379.4 254 72.8
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 4.3e-103 378.6 358 54.7
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.6e-102 375.6 309 62.8
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 2.0e-100 369.8 264 68.9
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 2.6e-100 369.4 291 61.2
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 8.4e-99 364.4 259 68.7
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 8.4e-99 364.4 290 62.1
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 1.1e-98 364.0 290 63.4
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.9e-98 363.2 298 62.1
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.2e-97 360.5 293 64.2
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.3e-95 352.4 270 63.7
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.6e-94 350.1 229 73.4
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 2.4e-93 346.3 293 59.4
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 8.9e-93 344.4 283 63.3
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 6.0e-89 331.6 229 72.9
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.1e-87 327.4 198 75.3
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.5e-87 327.0 211 76.8
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 5.6e-87 325.1 243 67.9
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 6.2e-86 321.6 227 70.5
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 9.0e-85 317.8 198 75.8
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 1.1e-82 310.8 201 73.1
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 7.1e-82 308.1 257 62.6
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 3.4e-76 289.3 283 54.4
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 3.4e-76 289.3 173 78.0
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 5.1e-72 275.4 302 45.4
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 4.8e-70 268.9 293 48.1
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 4.8e-70 268.9 291 52.2
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 5.3e-69 265.4 291 45.7
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 2.0e-68 263.5 294 45.9
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 3.4e-68 262.7 198 64.6
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 1.6e-65 253.8 186 68.3
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 2.7e-65 253.1 206 60.2
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 4.2e-58 229.2 182 64.3
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 7.2e-58 228.4 185 61.1
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.6e-57 227.3 169 65.7
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.9e-56 222.6 203 56.2
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 5.0e-51 205.7 256 43.8
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.1e-42 177.9 138 65.2
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 2.1e-41 173.7 124 64.5
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.4e-40 171.0 92 89.1
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.0e-39 167.2 93 81.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.3e-38 162.2 325 34.5
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 1.6e-33 147.5 93 75.3
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.7e-33 146.7 92 76.1
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 6.1e-33 145.6 147 55.8
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.4e-32 144.4 92 70.7
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 2.8e-30 136.7 125 57.6
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.7e-28 128.6 84 67.9
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 6.5e-27 125.6 107 62.6
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 2.1e-25 120.6 171 36.8
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 2.7e-25 120.2 80 68.8
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 3.6e-25 119.8 76 71.1
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 8.8e-24 115.2 102 63.7
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 7.5e-23 112.1 67 74.6
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 1.3e-22 111.3 96 59.4
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 8.3e-22 108.6 65 70.8
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 4.1e-21 106.3 120 47.5
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 3.5e-20 103.2 90 57.8
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.2e-17 94.7 214 31.3
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 3.6e-17 93.2 99 55.6
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 7.5e-15 85.5 81 60.5
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-14 83.6 52 71.2
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 8.3e-14 82.0 57 70.2
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 1.3e-11 74.7 52 63.5


User provided reference genes

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