Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 7.8e-151 538.5 716 100.0
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 4.5e-98 363.2 717 87.3
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 1.2e-77 295.4 700 82.6
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 1.4e-75 288.5 717 82.8
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 3.1e-75 287.3 719 74.8
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 2.9e-73 280.8 688 82.8
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 8.5e-73 279.3 720 78.2
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 8.5e-73 279.3 717 83.5
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 1.9e-72 278.1 716 79.7
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 4.2e-72 276.9 649 83.8
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 3.0e-70 270.8 649 84.7
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 2.6e-69 267.7 649 84.6
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 3.4e-69 267.3 649 84.6
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 1.4e-67 261.9 652 77.8
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.5e-66 256.9 713 80.8
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.8e-63 247.7 638 82.1
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 1.5e-61 241.9 644 82.5
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 1.5e-61 241.9 650 84.3
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 3.7e-60 237.3 643 80.1
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 8.3e-60 236.1 717 76.8
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 4.1e-59 233.8 721 78.1
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 6.6e-57 226.5 721 76.0
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 8.6e-57 226.1 651 83.7
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 1.9e-56 224.9 693 77.9
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 1.9e-56 224.9 651 83.6
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 1.8e-54 218.4 705 79.0
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 6.8e-54 216.5 174 61.5
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 1.2e-53 215.7 686 77.7
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 1.2e-53 215.7 686 77.7
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 2.0e-53 214.9 647 82.8
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 3.4e-53 214.2 644 76.4
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 1.3e-52 212.2 716 75.4
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 1.7e-52 211.8 645 81.6
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 2.2e-52 211.5 692 77.3
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 4.9e-52 210.3 717 76.2
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 8.3e-52 209.5 624 85.7
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 8.3e-52 209.5 645 80.2
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 3.2e-51 207.6 650 73.7
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 1.6e-50 205.3 646 75.7
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 4.6e-50 203.8 178 64.0
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 1.0e-49 202.6 717 77.0
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 2.3e-49 201.4 649 82.1
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 3.0e-49 201.1 617 81.8
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 6.6e-49 199.9 711 75.7
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 1.6e-47 195.3 718 76.2
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.6e-47 195.3 648 80.9
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 2.8e-47 194.5 653 71.7
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 6.2e-47 193.4 651 78.3
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 1.4e-46 192.2 651 78.8
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 2.3e-46 191.4 651 78.2
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 4.0e-46 190.7 645 78.6
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 5.2e-46 190.3 644 78.7
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 5.2e-46 190.3 658 65.7
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 8.9e-46 189.5 646 75.4
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.2e-45 189.1 612 82.0
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 1.2e-45 189.1 649 81.2
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 1.5e-45 188.7 714 72.8
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 2.0e-45 188.3 649 80.9
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 2.9e-44 184.5 141 66.7
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 1.1e-43 182.6 651 77.6
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 1.9e-43 181.8 708 72.9
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 3.5e-42 177.6 184 56.5
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 4.6e-42 177.2 133 66.9
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 4.6e-42 177.2 133 66.9
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 6.0e-42 176.8 714 74.9
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 7.8e-42 176.4 146 63.0
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 7.8e-42 176.4 128 68.8
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 2.3e-41 174.9 132 66.7
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 2.3e-41 174.9 132 66.7
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 3.0e-41 174.5 132 66.7
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 5.1e-41 173.7 644 79.7
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 1.9e-40 171.8 641 80.7
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 5.6e-40 170.2 646 77.9
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 5.6e-40 170.2 125 68.8
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 9.5e-40 169.5 641 78.2
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.6e-39 168.7 128 64.1
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 2.8e-39 167.9 131 64.1
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 2.8e-39 167.9 626 79.4
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 6.2e-39 166.8 137 62.0
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 8.1e-39 166.4 653 78.4
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 3.1e-38 164.5 656 69.4
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 2.6e-37 161.4 637 80.7
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 7.6e-37 159.8 178 48.3
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 7.6e-37 159.8 713 73.4
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 4.9e-36 157.1 112 69.6
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 8.4e-36 156.4 128 59.4
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 7.1e-35 153.3 137 59.9
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 9.2e-35 152.9 153 49.7
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 1.2e-34 152.5 651 71.6
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 1.2e-34 152.5 108 71.3
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 1.7e-33 148.7 177 49.7
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 3.9e-33 147.5 652 76.5
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 8.6e-33 146.4 177 48.6
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 1.5e-32 145.6 85 82.4
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 1.5e-32 145.6 120 68.3
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 2.5e-32 144.8 143 51.7
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 4.3e-32 144.1 646 76.0
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 9.0e-30 136.3 167 45.5
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.4e-29 134.4 83 78.3
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 1.6e-26 125.6 83 72.3
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 6.6e-25 120.2 70 87.1
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 4.3e-24 117.5 112 59.8
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 1.6e-23 115.5 82 69.5
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 4.0e-22 110.9 181 36.5
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 4.0e-22 110.9 181 36.5
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 7.6e-21 106.7 148 41.2
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 3.2e-19 101.3 133 47.4
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.2e-19 101.3 86 55.8
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.5e-18 97.8 60 78.3
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 1.0e-17 96.3 155 38.7
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 6.7e-17 93.6 65 69.2
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 3.3e-16 91.3 82 61.0
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 3.3e-16 91.3 82 61.0
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 8.1e-15 86.7 69 65.2
Cfa009012 Carpinus fangiana HOM05D002216 ORTHO05D007773 9.0e-06 56.6 73 30.1
Haze_12045 Corylus avellana HOM05D002216 ORTHO05D007773 9.0e-06 56.6 73 30.1
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 9.0e-06 56.6 144 29.2
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 9.0e-06 56.6 144 30.6


User provided reference genes

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