Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 7.9e-94 347.1 170 100.0
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 4.2e-79 298.1 171 86.0
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 4.4e-76 288.1 171 81.3
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 3.2e-71 271.9 171 78.4
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.1e-70 269.2 171 78.4
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 6.1e-70 267.7 171 77.8
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 4.4e-68 261.5 171 77.2
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 4.9e-59 231.5 171 66.1
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 3.3e-55 218.8 152 67.1
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 2.1e-54 216.1 166 60.2
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 3.6e-54 215.3 149 67.1
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 1.4e-53 213.4 150 68.7
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 4.0e-53 211.8 150 68.0
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 6.8e-53 211.1 136 72.8
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.6e-52 209.1 163 62.0
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 2.6e-52 209.1 139 67.6
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 7.5e-52 207.6 171 60.8
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 3.7e-51 205.3 167 59.3
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 6.4e-51 204.5 148 62.2
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 1.4e-50 203.4 148 62.8
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 1.8e-50 203.0 144 66.0
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 1.8e-50 203.0 145 66.2
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 3.2e-50 202.2 167 58.7
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 4.1e-50 201.8 158 62.7
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 5.4e-50 201.4 142 64.1
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 5.4e-50 201.4 141 67.4
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 5.4e-50 201.4 141 66.7
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 2.7e-49 199.1 148 61.5
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 3.5e-49 198.7 159 59.7
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 1.0e-48 197.2 151 62.9
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 6.6e-48 194.5 147 64.6
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 8.6e-48 194.1 151 62.3
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 4.3e-47 191.8 128 68.8
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 9.5e-47 190.7 160 55.6
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 9.5e-47 190.7 165 57.0
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 9.5e-47 190.7 149 61.7
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 2.1e-46 189.5 147 61.9
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 2.8e-46 189.1 143 61.5
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 4.7e-46 188.3 146 61.6
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 6.2e-46 188.0 144 59.7
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 6.2e-46 188.0 148 59.5
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 6.2e-46 188.0 165 56.4
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 6.2e-46 188.0 168 54.8
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 8.0e-46 187.6 165 56.4
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 1.0e-45 187.2 160 55.0
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 1.4e-45 186.8 164 54.3
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 4.0e-45 185.3 158 53.8
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 8.9e-45 184.1 160 53.1
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 8.9e-45 184.1 167 54.5
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 1.5e-44 183.3 160 53.8
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.5e-44 183.3 136 58.8
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 2.0e-44 183.0 160 53.1
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 2.6e-44 182.6 160 53.1
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 4.4e-44 181.8 160 53.1
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 5.8e-44 181.4 160 53.1
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 5.8e-44 181.4 160 53.1
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 7.5e-44 181.0 160 52.5
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 7.5e-44 181.0 141 56.0
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 1.7e-43 179.9 160 52.5
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 1.7e-43 179.9 151 57.0
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 2.2e-43 179.5 149 57.7
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.4e-42 176.8 159 53.5
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.4e-42 176.8 166 50.6
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 2.4e-42 176.0 139 58.3
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 2.4e-42 176.0 135 58.5
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 3.2e-42 175.6 160 51.2
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 4.1e-42 175.3 133 60.2
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 7.0e-42 174.5 159 54.1
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 1.2e-41 173.7 153 54.2
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 3.5e-41 172.2 146 55.5
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 4.6e-41 171.8 159 54.7
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 6.0e-41 171.4 160 49.4
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 7.8e-41 171.0 134 59.0
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 1.0e-40 170.6 138 56.5
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 1.3e-40 170.2 166 49.4
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 5.0e-40 168.3 142 53.5
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 6.6e-40 167.9 142 53.5
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 6.6e-40 167.9 161 49.1
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 8.6e-40 167.5 153 52.9
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 1.5e-39 166.8 138 55.8
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 1.9e-39 166.4 139 56.1
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 3.3e-39 165.6 112 70.5
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 3.3e-39 165.6 135 55.6
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 3.3e-39 165.6 135 55.6
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 3.6e-38 162.2 166 50.0
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 3.6e-38 162.2 141 53.9
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 4.7e-38 161.8 164 48.2
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 3.4e-36 155.6 127 54.3
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 5.8e-36 154.8 168 44.6
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 5.8e-36 154.8 168 44.6
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 7.5e-36 154.5 138 53.6
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 2.2e-35 152.9 110 63.6
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 3.7e-35 152.1 137 54.0
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 4.9e-35 151.8 167 47.3
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 5.4e-34 148.3 164 45.7
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 2.1e-33 146.4 170 45.9
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 1.7e-32 143.3 120 60.0
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 1.2e-30 137.1 93 67.7
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.6e-30 136.7 109 55.0
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 3.6e-30 135.6 138 45.7
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 1.9e-26 123.2 147 43.5
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 1.2e-25 120.6 140 43.6
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 2.7e-25 119.4 127 40.9
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 4.6e-25 118.6 145 39.3
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 5.1e-24 115.2 90 63.3
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 3.3e-23 112.5 161 36.6
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 5.2e-21 105.1 197 33.0
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.6e-17 93.6 64 60.9
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 6.6e-16 88.2 144 35.4
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 1.9e-15 86.7 69 58.0
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 1.8e-13 80.1 62 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 1.2e-12 77.4 103 37.9
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 3.4e-12 75.9 94 45.7
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 9.9e-12 74.3 88 44.3
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 1.9e-10 70.1 130 30.0
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 4.2e-10 68.9 135 34.1
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 1.1e-07 60.8 140 28.6
Cfa010446 Carpinus fangiana HOM05D006750 ORTHO05D008426 2.8e-06 56.2 53 50.9
Cfa003473 Carpinus fangiana HOM05D006750 ORTHO05D008426 6.2e-06 55.1 32 81.2


User provided reference genes

Program Settings