Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 7.1e-267 923.3 453 100.0
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.6e-234 815.8 450 88.2
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 4.0e-233 811.2 450 87.3
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 2.7e-213 745.3 451 80.0
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 4.3e-211 738.0 451 79.4
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 6.1e-210 734.2 451 78.7
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 7.5e-208 727.2 451 78.5
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 3.4e-200 701.8 448 77.0
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.7e-197 692.2 444 75.5
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 8.6e-196 687.2 448 74.6
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 9.5e-195 683.7 449 75.7
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 5.2e-193 677.9 444 76.1
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.3e-191 673.3 444 73.9
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.4e-191 671.0 444 74.1
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.6e-189 666.4 448 73.4
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 7.8e-189 664.1 448 72.3
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.9e-187 659.4 450 72.7
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 6.2e-186 654.4 443 71.3
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.4e-185 653.3 448 71.4
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 6.8e-185 651.0 448 71.0
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 4.4e-184 648.3 438 72.8
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 9.9e-184 647.1 448 70.3
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 9.9e-184 647.1 448 70.8
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 4.9e-183 644.8 442 71.9
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 6.4e-183 644.4 434 72.8
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 5.4e-182 641.3 450 70.4
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 9.2e-182 640.6 435 71.0
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.6e-181 639.8 432 71.3
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 2.1e-181 639.4 448 69.9
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 3.5e-181 638.6 444 70.7
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 4.6e-181 638.3 442 71.0
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.3e-180 636.7 444 71.6
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.5e-179 633.3 442 70.8
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.9e-177 624.4 449 68.8
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.4e-176 622.1 449 68.6
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 7.6e-176 620.9 450 68.4
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.3e-175 620.2 442 67.4
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.7e-175 619.8 450 68.2
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 6.4e-175 617.8 441 69.4
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 8.4e-175 617.5 440 67.3
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 7.1e-174 614.4 414 71.7
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.2e-173 613.6 441 69.2
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 2.1e-173 612.8 389 77.6
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 4.6e-173 611.7 448 67.6
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 4.6e-173 611.7 448 67.6
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.6e-173 611.7 449 67.7
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 7.8e-173 610.9 443 67.7
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 3.9e-172 608.6 432 68.3
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 3.9e-172 608.6 443 69.1
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.1e-171 607.1 443 68.6
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 1.5e-171 606.7 434 68.2
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.5e-171 605.9 442 67.0
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 5.6e-171 604.7 435 68.3
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 7.3e-171 604.4 443 67.7
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 9.6e-171 604.0 433 67.4
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.3e-170 603.6 442 67.0
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 3.6e-170 602.1 435 68.5
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 4.8e-170 601.7 444 67.1
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 6.2e-170 601.3 438 68.5
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.1e-169 600.5 443 68.6
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.4e-169 600.1 450 66.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.3e-169 598.2 445 68.1
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.7e-167 593.2 445 66.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 2.2e-167 592.8 408 72.3
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.1e-166 590.5 450 64.9
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 1.4e-166 590.1 448 66.3
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 2.4e-166 589.3 418 68.4
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 5.4e-166 588.2 438 67.1
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 1.6e-165 586.6 449 66.1
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 6.0e-165 584.7 409 68.9
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 6.7e-164 581.3 441 66.0
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 1.5e-163 580.1 441 63.7
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 3.3e-163 578.9 450 64.7
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 4.3e-163 578.6 435 67.8
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 5.6e-163 578.2 441 64.9
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.6e-162 576.6 466 63.9
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 6.2e-162 574.7 444 66.7
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.2e-160 570.5 462 63.2
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.3e-159 567.0 435 64.6
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 2.2e-159 566.2 459 64.5
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.9e-158 563.1 456 65.1
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 3.5e-157 558.9 445 64.3
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 4.6e-157 558.5 456 64.5
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 2.3e-156 556.2 450 64.9
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 3.9e-156 555.4 470 61.1
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 5.1e-156 555.1 456 64.0
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.9e-155 553.1 442 62.4
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 3.3e-155 552.4 456 63.6
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 4.8e-154 548.5 455 64.4
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 6.2e-154 548.1 456 64.0
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 8.2e-154 547.7 459 63.6
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 8.2e-154 547.7 456 63.8
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 8.2e-154 547.7 432 62.3
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.4e-153 547.0 455 63.7
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 3.1e-153 545.8 448 64.5
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 3.1e-153 545.8 420 67.6
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 9.0e-153 544.3 456 63.6
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 9.0e-153 544.3 456 63.6
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 2.0e-152 543.1 431 64.3
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 2.0e-152 543.1 443 63.2
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 2.6e-152 542.7 452 63.9
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.4e-152 542.3 437 64.1
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.4e-152 542.3 437 64.1
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 2.9e-151 539.3 440 60.7
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 6.5e-151 538.1 456 61.8
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 3.2e-150 535.8 448 61.4
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 5.5e-150 535.0 432 61.1
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.2e-149 533.9 456 61.4
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 1.2e-149 533.9 446 62.1
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 1.3e-148 530.4 442 60.2
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 6.7e-148 528.1 452 61.5
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.6e-146 523.5 442 60.0
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.3e-146 521.5 349 71.6
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 6.3e-146 521.5 376 67.0
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.7e-143 513.5 349 71.3
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 5.0e-143 511.9 370 70.3
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.4e-142 510.4 350 70.9
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.9e-142 510.0 441 58.3
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.2e-142 509.2 380 65.3
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.7e-141 506.1 450 61.6
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.4e-140 503.8 417 60.0
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 7.4e-139 498.0 348 68.4
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 2.0e-136 490.0 320 75.0
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 4.2e-134 482.3 362 66.9
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 5.9e-120 435.3 449 53.0
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.0e-119 434.5 372 62.1
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.9e-118 430.3 332 63.9
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.5e-110 404.1 387 56.8
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 5.5e-102 375.6 328 58.5
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 5.5e-102 375.6 328 58.5
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.7e-95 354.0 440 46.8
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 3.8e-95 352.8 394 48.2
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 2.0e-83 313.9 231 67.1
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 2.9e-74 283.5 189 72.0
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 8.9e-68 261.9 379 43.0
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.7e-66 257.7 263 54.8
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.7e-63 245.4 252 54.4
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.6e-59 233.8 158 69.6
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 9.9e-59 231.9 139 76.3
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.1e-39 166.4 107 72.9
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 8.7e-39 165.6 153 54.9
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 5.5e-33 146.4 138 59.4
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 6.1e-32 142.9 110 69.1
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 6.7e-31 139.4 111 67.6
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.6e-29 134.8 99 62.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 2.2e-18 97.8 51 84.3
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 9.4e-09 65.9 67 50.7


User provided reference genes

Program Settings