Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 1.6e-68 262.7 137 100.0
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 4.9e-54 214.5 135 82.2
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 9.4e-45 183.7 116 80.2
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 8.8e-43 177.2 142 70.4
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 1.2e-39 166.8 142 65.5
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 3.3e-34 148.7 137 60.6
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 1.3e-33 146.7 118 65.3
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 1.3e-33 146.7 136 58.8
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.3e-33 146.7 138 60.9
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 4.8e-33 144.8 117 65.0
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 5.3e-32 141.4 114 63.2
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 7.0e-32 141.0 115 62.6
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 9.1e-32 140.6 137 55.5
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 1.5e-31 139.8 116 62.9
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 1.5e-31 139.8 120 60.0
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 2.0e-31 139.4 138 59.4
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 8.5e-30 134.0 135 51.9
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.4e-29 133.3 132 52.3
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 7.2e-29 131.0 133 52.6
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 9.4e-29 130.6 128 52.3
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 9.4e-29 130.6 129 56.6
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.2e-28 130.2 132 52.3
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 4.7e-28 128.3 119 57.1
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 4.7e-28 128.3 128 56.2
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.0e-27 127.1 135 51.9
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 1.4e-27 126.7 142 50.7
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.8e-27 126.3 133 51.1
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 8.8e-27 124.0 117 55.6
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 2.0e-26 122.9 133 51.9
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.6e-26 122.5 117 54.7
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 5.7e-26 121.3 116 55.2
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.7e-25 119.8 129 52.7
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 2.8e-25 119.0 93 65.6
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 3.7e-25 118.6 115 54.8
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 8.2e-25 117.5 129 51.2
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 1.1e-24 117.1 133 51.1
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 1.8e-24 116.3 112 53.6
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 1.8e-24 116.3 127 52.0
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.6e-23 113.2 128 49.2
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.0e-23 112.8 114 51.8
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 4.5e-23 111.7 140 47.1
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 5.9e-23 111.3 140 45.7
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 7.7e-23 110.9 121 53.7
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.7e-22 109.8 110 52.7
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 1.7e-22 109.8 121 49.6
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 3.8e-22 108.6 95 61.1
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 3.8e-22 108.6 136 47.1
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 5.0e-22 108.2 91 59.3
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 8.5e-22 107.5 110 52.7
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 1.5e-21 106.7 96 59.4
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 3.2e-21 105.5 124 44.4
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 3.2e-21 105.5 132 44.7
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 3.2e-21 105.5 138 47.8
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 4.2e-21 105.1 124 47.6
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.2e-21 105.1 148 42.6
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 7.2e-21 104.4 113 50.4
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 7.2e-21 104.4 100 52.0
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 9.4e-21 104.0 110 51.8
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.2e-20 103.6 117 56.4
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 1.6e-20 103.2 104 51.9
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 1.6e-20 103.2 129 46.5
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 2.7e-20 102.4 128 45.3
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 2.7e-20 102.4 92 55.4
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 3.6e-20 102.1 113 48.7
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 3.6e-20 102.1 103 47.6
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 4.7e-20 101.7 121 49.6
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 4.7e-20 101.7 86 59.3
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 6.1e-20 101.3 107 49.5
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.0e-19 100.5 104 51.0
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 1.0e-19 100.5 105 48.6
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 1.0e-19 100.5 115 47.8
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 1.8e-19 99.8 111 48.6
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 2.3e-19 99.4 103 53.4
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 2.3e-19 99.4 103 53.4
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 4.0e-19 98.6 138 44.9
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 1.2e-18 97.1 104 50.0
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 1.2e-18 97.1 110 43.6
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 1.5e-18 96.7 120 49.2
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 2.6e-18 95.9 115 47.0
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 2.6e-18 95.9 133 39.1
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 5.7e-18 94.7 112 47.3
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 9.7e-18 94.0 103 51.5
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 3.7e-17 92.0 137 40.9
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 3.7e-17 92.0 101 50.5
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 6.3e-17 91.3 101 46.5
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 8.3e-17 90.9 101 47.5
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 1.8e-16 89.7 88 52.3
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 5.3e-16 88.2 124 41.1
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 1.6e-15 86.7 114 43.9
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 4.5e-15 85.1 132 39.4
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 1.3e-14 83.6 126 42.1
FAN25G0807 Fragaria x ananassa HOM05D000251 ORTHO05D000414 1.3e-14 83.6 106 50.0
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 5.0e-14 81.6 111 42.3
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 8.5e-14 80.9 148 35.8
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 2.5e-13 79.3 119 41.2
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 9.4e-13 77.4 53 69.8
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 1.2e-12 77.0 137 35.8
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 2.7e-12 75.9 163 36.8
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 2.7e-12 75.9 92 47.8
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 3.6e-12 75.5 92 46.7
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 3.6e-12 75.5 59 64.4
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 2.0e-10 69.7 67 50.7
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 2.0e-10 69.7 67 50.7
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 2.2e-09 66.2 62 48.4
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 2.2e-09 66.2 62 48.4
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 1.6e-07 60.1 75 41.3
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 6.6e-06 54.7 91 41.8


User provided reference genes

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