Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 9.6e-33 142.9 72 100.0
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 3.4e-30 134.4 72 93.1
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 4.5e-30 134.0 72 91.7
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 4.8e-24 114.0 74 85.1
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 1.3e-21 105.9 76 77.6
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 2.2e-21 105.1 74 74.3
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 6.5e-21 103.6 75 76.0
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 1.1e-20 102.8 66 81.8
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 3.0e-18 94.7 72 70.8
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 5.1e-18 94.0 69 72.5
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 1.9e-17 92.0 77 66.2
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 2.5e-17 91.7 77 64.9
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 4.3e-17 90.9 76 67.1
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 9.7e-17 89.7 73 63.0
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 1.3e-16 89.4 72 66.7
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.6e-16 89.0 74 63.5
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 1.6e-16 89.0 76 65.8
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 3.7e-16 87.8 72 62.5
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 4.8e-16 87.4 72 63.9
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 6.3e-16 87.0 72 65.3
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 8.2e-16 86.7 70 61.4
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 1.1e-15 86.3 75 62.7
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 2.4e-15 85.1 73 65.8
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 3.1e-15 84.7 67 65.7
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 3.1e-15 84.7 72 59.7
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 3.1e-15 84.7 73 63.0
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 4.1e-15 84.3 73 64.4
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 4.1e-15 84.3 63 68.3
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 4.1e-15 84.3 72 63.9
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 4.1e-15 84.3 73 64.4
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 6.9e-15 83.6 72 62.5
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 9.0e-15 83.2 73 63.0
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 9.0e-15 83.2 73 63.0
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 9.0e-15 83.2 73 63.0
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 9.0e-15 83.2 57 71.9
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.2e-14 82.8 73 63.0
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.2e-14 82.8 73 63.0
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 2.0e-14 82.0 72 62.5
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 3.4e-14 81.3 72 58.3
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 3.4e-14 81.3 73 61.6
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 3.4e-14 81.3 61 67.2
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 4.5e-14 80.9 73 61.6
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 5.9e-14 80.5 72 58.3
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 7.7e-14 80.1 74 64.9
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 7.7e-14 80.1 49 77.6
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.0e-13 79.7 66 65.2
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 1.0e-13 79.7 71 60.6
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.0e-13 79.7 72 62.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.0e-13 79.7 72 58.3
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 1.3e-13 79.3 73 61.6
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 1.7e-13 79.0 73 61.6
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.7e-13 79.0 59 67.8
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 1.7e-13 79.0 61 68.9
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 3.8e-13 77.8 73 63.0
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 3.8e-13 77.8 73 63.0
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 3.8e-13 77.8 72 58.3
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 8.5e-13 76.6 74 59.5
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 8.5e-13 76.6 81 55.6
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.4e-12 75.9 63 65.1
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 1.9e-12 75.5 73 60.3
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 1.9e-12 75.5 61 62.3
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 3.2e-12 74.7 69 60.9
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 7.2e-12 73.6 63 63.5
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 7.2e-12 73.6 49 69.4
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 1.6e-11 72.4 46 73.9
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 1.6e-11 72.4 65 58.5
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 2.7e-11 71.6 75 54.7
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 4.6e-11 70.9 49 69.4
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.4e-10 69.3 73 56.2
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 1.8e-10 68.9 49 63.3
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 6.7e-10 67.0 49 69.4
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 6.7e-10 67.0 65 55.4
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.1e-09 66.2 68 54.4
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 2.0e-09 65.5 61 57.4
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 1.3e-08 62.8 66 48.5
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.2e-08 62.0 56 51.8
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.2e-08 62.0 56 51.8
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 2.8e-08 61.6 44 59.1
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.8e-08 60.8 47 55.3
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 1.4e-07 59.3 53 52.8
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 4.1e-07 57.8 64 53.1
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 4.5e-06 54.3 50 58.0
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 5.9e-06 53.9 78 46.2
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 7.7e-06 53.5 53 54.7


User provided reference genes

Program Settings