Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 2.6e-106 388.7 189 100.0
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 5.5e-88 327.8 244 70.1
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.0e-86 322.0 242 68.2
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 5.2e-86 321.2 242 67.8
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 8.8e-86 320.5 242 66.9
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 4.4e-85 318.2 242 67.4
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 7.5e-85 317.4 242 67.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 3.5e-82 308.5 242 64.9
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 2.9e-73 278.9 241 58.9
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 5.0e-73 278.1 245 59.6
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 1.1e-72 276.9 246 58.1
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.5e-72 276.6 245 59.2
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 3.3e-72 275.4 246 59.8
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 4.3e-72 275.0 240 60.4
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 9.5e-72 273.9 248 56.9
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.2e-71 273.5 242 59.5
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.8e-71 272.3 249 56.6
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 4.7e-71 271.6 248 56.0
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 8.0e-71 270.8 248 57.3
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.0e-70 270.4 249 55.8
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.4e-70 270.0 247 57.1
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 3.1e-70 268.9 245 58.8
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 6.8e-70 267.7 242 58.7
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.2e-69 266.9 248 56.0
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.2e-69 266.9 248 57.7
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.0e-69 266.2 248 56.9
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 2.6e-69 265.8 248 55.2
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 3.4e-69 265.4 248 55.2
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 3.4e-69 265.4 242 57.9
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 4.4e-69 265.0 245 57.6
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 5.8e-69 264.6 242 57.9
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 7.5e-69 264.2 245 55.9
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 9.8e-69 263.8 248 56.0
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 3.7e-68 261.9 247 56.3
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 3.7e-68 261.9 245 55.1
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 7.0e-67 257.7 246 55.3
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 9.2e-67 257.3 246 54.1
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 2.0e-66 256.1 239 56.1
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 3.5e-66 255.4 245 55.9
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.3e-65 253.4 238 56.3
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 2.3e-65 252.7 249 52.6
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 2.3e-65 252.7 282 50.0
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 3.0e-65 252.3 241 54.4
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.9e-65 251.9 247 53.4
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 8.6e-65 250.8 240 54.2
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 1.9e-64 249.6 241 56.4
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 3.6e-63 245.4 237 54.0
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 6.2e-63 244.6 240 52.5
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 6.2e-63 244.6 243 53.1
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 1.1e-62 243.8 242 52.9
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.4e-62 243.4 237 53.2
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.4e-62 243.4 242 53.3
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.4e-62 243.4 242 53.7
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 1.8e-62 243.0 242 52.5
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 2.3e-62 242.7 237 52.7
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 2.3e-62 242.7 242 53.3
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 3.1e-62 242.3 243 52.7
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 6.8e-62 241.1 246 51.6
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 6.8e-62 241.1 237 53.2
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 6.8e-62 241.1 204 61.8
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 8.9e-62 240.7 237 53.6
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.5e-61 240.0 239 52.3
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 2.0e-61 239.6 237 53.2
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 4.4e-61 238.4 238 52.5
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 5.8e-61 238.0 224 55.4
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 5.8e-61 238.0 237 52.7
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 9.8e-61 237.3 240 50.8
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 1.3e-60 236.9 237 52.7
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.7e-60 236.5 252 50.0
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 2.2e-60 236.1 242 52.5
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.9e-60 235.7 246 50.4
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 2.9e-60 235.7 218 55.0
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 4.9e-60 235.0 237 53.2
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 6.4e-60 234.6 237 53.2
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 2.4e-59 232.6 243 51.0
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 2.4e-59 232.6 237 52.7
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 2.1e-58 229.6 242 52.5
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 2.1e-58 229.6 241 51.5
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 7.8e-58 227.6 245 49.0
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.3e-57 226.9 242 52.1
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.3e-57 226.1 242 52.1
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 7.3e-56 221.1 244 48.0
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 1.6e-55 219.9 246 48.4
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 4.7e-55 218.4 205 56.6
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 4.7e-55 218.4 272 45.6
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 6.8e-54 214.5 218 52.8
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 8.9e-54 214.2 193 58.5
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.5e-53 213.4 204 54.4
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.6e-53 212.6 240 47.9
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 5.8e-53 211.5 210 54.3
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 8.3e-52 207.6 204 54.9
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.9e-51 206.5 216 52.3
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 2.4e-51 206.1 198 53.0
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 2.3e-49 199.5 238 46.2
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.5e-48 196.8 103 88.3
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 7.3e-48 194.5 190 52.6
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 9.5e-48 194.1 210 50.0
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 9.5e-48 194.1 241 41.1
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 1.2e-47 193.7 210 49.5
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.2e-47 193.7 192 51.6
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.8e-47 192.6 211 49.8
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 3.6e-47 192.2 211 49.3
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 3.6e-47 192.2 211 49.3
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 4.7e-47 191.8 211 49.3
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 6.2e-47 191.4 269 42.0
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 8.9e-46 187.6 196 50.5
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 8.9e-46 187.6 204 52.9
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.0e-45 186.4 239 40.6
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.6e-45 186.0 245 38.8
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 9.9e-45 184.1 180 54.4
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 9.2e-43 177.6 239 40.6
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.6e-41 171.4 239 38.1
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 3.6e-39 165.6 231 46.3
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 6.9e-38 161.4 188 46.8
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 9.9e-37 157.5 101 74.3
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-36 156.0 219 39.3
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 4.9e-36 155.2 142 57.7
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.4e-35 153.7 105 66.7
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 1.9e-35 153.3 183 46.4
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.1e-35 151.4 225 37.3
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 6.0e-34 148.3 213 38.5
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 7.8e-34 147.9 169 46.2
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.0e-33 147.5 168 52.4
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 3.0e-33 146.0 201 44.3
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 7.3e-32 141.4 87 78.2
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 9.6e-32 141.0 164 46.3
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 3.1e-30 136.0 100 66.0
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 9.0e-30 134.4 155 49.7
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.5e-29 133.7 219 37.0
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 1.5e-29 133.7 126 56.3
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 7.6e-29 131.3 145 50.3
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.3e-28 130.6 231 38.5
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.1e-27 127.5 89 71.9
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 5.4e-27 125.2 86 67.4
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 7.9e-26 121.3 162 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 5.1e-25 118.6 176 39.2
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 5.1e-25 118.6 126 49.2
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.5e-24 116.3 87 62.1
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 1.6e-23 113.6 181 40.3
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.3e-20 104.0 219 31.1
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 3.8e-20 102.4 84 56.0
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 1.1e-19 100.9 75 68.0
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 7.1e-19 98.2 67 65.7
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 1.8e-14 83.6 62 66.1
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 7.6e-13 78.2 81 46.9
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.2e-12 76.6 73 50.7
FAN14G1154 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.3e-09 67.4 154 36.4
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.6e-07 60.5 31 74.2
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.4e-06 57.4 158 28.5
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 4.1e-06 55.8 106 31.1
Migut.E01275 Erythranthe guttata HOM05D004805 ORTHO05D005756 6.9e-06 55.1 28 85.7


User provided reference genes

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