Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 0.0e+00 1090.9 555 100.0
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 7.7e-247 857.1 563 79.9
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 4.8e-241 837.8 561 78.6
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 5.6e-213 744.6 564 70.4
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 9.5e-213 743.8 583 68.8
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 3.4e-210 735.3 583 68.6
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 2.4e-208 729.2 569 69.2
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 3.0e-206 722.2 590 67.5
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 1.3e-193 680.2 559 64.0
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 4.9e-193 678.3 579 62.0
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 1.9e-192 676.4 580 63.1
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 5.4e-192 674.9 566 62.4
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 6.0e-191 671.4 535 66.4
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 5.1e-190 668.3 560 63.4
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 1.1e-189 667.2 554 62.8
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.6e-186 656.0 567 60.8
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 7.1e-184 647.9 554 60.8
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 2.7e-183 646.0 549 61.0
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 8.7e-182 641.0 578 60.7
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.9e-181 639.8 528 64.0
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 4.3e-181 638.6 551 59.9
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.4e-179 633.6 549 61.2
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 1.5e-178 630.2 425 74.8
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 4.5e-178 628.6 581 59.9
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.3e-172 610.5 561 57.0
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 2.4e-171 606.3 558 56.8
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.0e-170 603.2 567 56.4
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 2.2e-169 599.7 591 55.5
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 1.3e-161 573.9 555 55.7
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 3.8e-161 572.4 555 54.8
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 9.3e-160 567.8 557 56.4
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.6e-159 567.0 543 55.6
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 1.6e-159 567.0 543 55.2
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.3e-158 563.9 553 55.3
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 5.7e-157 558.5 451 62.5
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.1e-152 544.3 575 53.0
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 2.5e-152 543.1 545 55.2
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 7.9e-151 538.1 557 51.9
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 7.9e-151 538.1 557 51.9
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 1.4e-150 537.3 558 54.5
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 6.9e-147 525.0 633 47.7
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 6.1e-143 511.9 661 44.9
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 2.5e-136 490.0 488 54.5
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 7.2e-136 488.4 626 45.0
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 4.4e-133 479.2 729 39.9
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 7.0e-131 471.9 711 40.5
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.6e-130 470.7 566 47.3
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 8.5e-129 464.9 487 52.6
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 6.1e-127 458.8 435 57.7
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 3.0e-126 456.4 435 57.7
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 6.7e-126 455.3 473 51.0
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 1.6e-119 434.1 424 55.0
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 6.8e-118 428.7 431 53.4
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.0e-109 400.6 420 52.4
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.2e-106 391.3 348 57.8
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 1.3e-100 371.3 304 60.5
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 4.9e-100 369.4 268 67.2
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 8.0e-95 352.1 410 48.3
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 4.1e-91 339.7 464 43.1
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 2.1e-87 327.4 466 44.4
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 2.4e-83 313.9 221 71.5
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 5.6e-72 276.2 414 39.1
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 2.7e-66 257.3 430 36.3
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 4.2e-59 233.4 189 61.9
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 1.9e-43 181.4 124 71.0
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 3.3e-40 170.6 172 51.7
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.1e-38 165.6 195 46.2
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 7.7e-37 159.5 104 73.1
GSVIVG01037970001 Vitis vinifera HOM05D007837 ORTHO05D009965 4.2e-35 153.7 100 76.0
Medtr4g035220 Medicago truncatula HOM05D007837 ORTHO05D009965 1.1e-32 145.6 126 60.3
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 1.1e-32 145.6 115 60.0
Glyma.03G069100 Glycine max HOM05D007837 ORTHO05D009965 1.1e-27 129.0 175 45.1
Oeu008971.1 Olea europaea HOM05D007837 ORTHO05D009965 1.9e-27 128.3 106 61.3
Hma1.2p1_0410F.1_g147000 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 1.2e-21 109.0 189 36.5
PRCOL_00005542 Prasinoderma coloniale HOM05D007837 ORTHO05D009965 8.5e-20 102.8 350 27.1
MCO10G143 Micromonas commoda HOM05D007837 ORTHO05D009965 2.5e-19 101.3 428 24.5
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.6e-18 98.6 62 74.2
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.1e-16 92.4 63 66.7
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 2.0e-16 91.7 63 66.7
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.8e-15 87.8 243 29.6
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.8e-15 87.8 243 29.6
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.4e-14 85.5 239 32.2
SMO263G0007 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 3.1e-14 84.3 233 27.9
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.1e-14 82.8 242 27.3
Cpa.g.sc192.14 Carica papaya HOM05D007837 ORTHO05D009965 1.2e-13 82.4 58 63.8
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 7.7e-13 79.7 285 28.1
TAR362G0005 Trochodendron aralioides HOM05D007837 ORTHO05D009965 6.5e-12 76.6 72 50.0
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.9e-11 75.1 300 25.7
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 3.2e-11 74.3 299 26.1
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 5.5e-11 73.6 255 26.3
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 5.5e-11 73.6 367 25.6
Sabra11G0145800 Salix brachista HOM05D007837 ORTHO05D009965 4.7e-10 70.5 112 40.2
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 8.0e-10 69.7 271 25.8
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 8.0e-10 69.7 265 24.9
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 1.0e-09 69.3 200 29.5
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 1.4e-09 68.9 327 24.8
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.4e-09 68.9 264 26.5
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.3e-09 68.2 313 25.6
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 2.3e-09 68.2 272 25.0
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 3.0e-09 67.8 310 24.5
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 3.0e-09 67.8 276 26.8
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 8.8e-09 66.2 357 24.1
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 8.8e-09 66.2 263 24.0
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.2e-08 65.9 272 23.5
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 1.2e-08 65.9 315 25.7
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.2e-08 65.9 315 25.7
TAR371G0483 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.5e-08 65.5 40 70.0
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 2.0e-08 65.1 270 25.6
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.6e-08 64.7 315 25.4
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 4.4e-08 63.9 282 24.1
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 4.4e-08 63.9 353 23.2
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 4.4e-08 63.9 303 23.8
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 5.7e-08 63.5 252 25.8
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 5.7e-08 63.5 269 23.8
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 5.7e-08 63.5 251 24.3
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 7.5e-08 63.2 262 24.8
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 7.5e-08 63.2 254 25.2
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 7.5e-08 63.2 251 24.3
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 7.5e-08 63.2 257 25.3
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 9.7e-08 62.8 254 26.0
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 1.7e-07 62.0 230 28.3
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.7e-07 62.0 390 22.1
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 2.8e-07 61.2 299 24.1
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 2.8e-07 61.2 255 23.9
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 2.8e-07 61.2 362 24.6
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 2.8e-07 61.2 221 27.1
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 6.3e-07 60.1 276 26.1
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 8.3e-07 59.7 195 23.6
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 8.3e-07 59.7 203 24.6
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 8.3e-07 59.7 254 25.2
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 1.1e-06 59.3 287 22.0
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.1e-06 59.3 267 24.7
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 1.8e-06 58.5 277 23.5
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.8e-06 58.5 370 25.4
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 1.8e-06 58.5 285 23.2
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 1.8e-06 58.5 193 27.5
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.8e-06 58.5 230 24.8
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 5.3e-06 57.0 246 25.6
SEGI_26529 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 9.1e-06 56.2 78 41.0
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 9.1e-06 56.2 151 27.2


User provided reference genes

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