Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.8e-159 565.8 289 100.0
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 8.1e-139 497.3 297 85.5
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 2.2e-136 489.2 297 84.8
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 8.3e-136 487.3 297 83.8
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 8.6e-133 477.2 314 79.6
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.9e-132 476.1 315 80.0
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.2e-131 473.4 315 79.4
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 6.2e-131 471.1 301 80.7
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 2.4e-130 469.2 296 80.7
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 5.2e-130 468.0 296 80.7
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 5.8e-129 464.5 296 79.7
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 1.3e-128 463.4 297 79.8
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 2.2e-128 462.6 296 80.7
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 2.9e-128 462.2 297 79.8
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.9e-127 459.5 298 79.2
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 2.4e-127 459.1 297 80.8
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 7.1e-127 457.6 296 79.7
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 9.2e-127 457.2 297 78.5
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.6e-126 456.4 295 79.3
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.7e-126 455.7 298 77.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.7e-126 455.7 298 77.9
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 4.6e-126 454.9 297 78.1
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 6.0e-126 454.5 298 76.8
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 7.8e-126 454.1 297 78.5
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 1.7e-125 453.0 297 76.1
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 2.3e-125 452.6 293 79.5
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 2.3e-125 452.6 341 71.0
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 6.6e-125 451.1 297 78.8
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 6.6e-125 451.1 297 78.1
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.1e-124 450.3 297 78.1
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 2.5e-124 449.1 296 78.7
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 4.3e-124 448.4 296 77.0
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 5.6e-124 448.0 296 77.0
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 7.3e-124 447.6 297 76.8
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 1.6e-123 446.4 296 76.4
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 2.1e-123 446.0 297 75.1
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 2.8e-123 445.7 297 76.8
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 2.8e-123 445.7 297 76.4
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 3.6e-123 445.3 297 76.1
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 4.7e-123 444.9 298 77.9
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.7e-123 444.9 293 76.1
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.7e-123 444.9 293 76.1
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 6.2e-123 444.5 297 77.1
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 8.1e-123 444.1 297 77.1
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 8.1e-123 444.1 298 76.2
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.1e-122 443.7 297 77.1
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.4e-122 443.4 296 77.4
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 2.4e-122 442.6 302 76.8
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 5.3e-122 441.4 297 76.4
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.3e-122 441.4 297 75.1
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 5.3e-122 441.4 297 75.8
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 9.0e-122 440.7 297 77.1
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 1.2e-121 440.3 302 76.5
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.0e-121 439.5 297 73.7
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 2.6e-121 439.1 296 75.3
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 5.8e-121 438.0 297 76.1
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 9.9e-121 437.2 297 74.7
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 9.9e-121 437.2 298 75.8
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.3e-120 436.8 295 74.2
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 1.7e-120 436.4 296 75.7
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.1e-119 433.7 295 75.3
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 2.4e-119 432.6 292 75.0
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 5.4e-119 431.4 297 74.1
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 5.4e-119 431.4 295 74.9
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 7.1e-119 431.0 295 74.6
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.1e-118 429.5 296 73.6
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.1e-118 429.5 295 73.9
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.7e-118 429.1 299 72.9
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 1.3e-117 426.8 296 74.0
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 1.7e-117 426.4 293 73.4
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 1.7e-117 426.4 295 73.2
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 2.3e-117 426.0 293 72.7
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.0e-117 425.6 282 77.3
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 3.0e-117 425.6 297 72.7
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 5.1e-117 424.9 293 72.7
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 6.6e-117 424.5 292 72.9
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 7.3e-116 421.0 293 72.0
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 7.3e-116 421.0 293 73.4
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 1.3e-115 420.2 292 71.6
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 2.1e-115 419.5 297 72.7
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 2.1e-115 419.5 293 73.0
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 3.6e-115 418.7 295 73.2
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.8e-115 418.3 254 81.1
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 4.8e-115 418.3 297 71.7
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 4.8e-115 418.3 297 72.7
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 6.2e-115 417.9 271 77.9
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 8.1e-115 417.5 293 72.7
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 8.1e-115 417.5 293 72.7
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.8e-114 416.4 297 72.4
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 2.4e-114 416.0 295 72.9
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 6.9e-114 414.5 282 74.8
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 6.9e-114 414.5 297 71.4
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 9.0e-114 414.1 293 72.0
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.5e-113 413.3 289 71.3
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 3.4e-113 412.1 298 70.8
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 7.6e-113 411.0 297 70.4
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 9.9e-113 410.6 293 69.3
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 1.3e-112 410.2 293 71.7
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-112 409.8 297 70.7
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 2.2e-112 409.5 293 73.7
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 4.9e-112 408.3 277 76.2
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 1.1e-111 407.1 298 70.8
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 1.1e-111 407.1 298 70.5
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 2.7e-110 402.5 296 69.6
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 3.5e-110 402.1 281 73.3
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 1.8e-109 399.8 296 69.9
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 7.4e-108 394.4 293 68.9
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.4e-106 389.4 320 64.1
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 9.3e-103 377.5 296 66.9
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 7.9e-102 374.4 219 84.0
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 3.3e-100 369.0 297 69.0
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 7.4e-92 341.3 290 58.6
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 2.2e-91 339.7 219 76.7
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 4.1e-90 335.5 296 60.1
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 1.0e-88 330.9 223 77.6
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 1.2e-86 323.9 254 61.0
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 2.1e-86 323.2 293 56.0
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 3.0e-85 319.3 289 56.7
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 6.7e-85 318.2 222 72.5
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 8.8e-85 317.8 293 55.3
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.2e-83 313.2 293 54.3
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.2e-83 313.2 279 60.6
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.4e-82 310.5 222 72.5
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 6.5e-80 301.6 295 53.6
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.5e-79 299.7 269 59.9
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 1.1e-74 284.3 212 67.5
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 4.4e-68 262.3 256 52.7
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-67 260.8 227 60.4
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 9.1e-66 254.6 176 73.9
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.1e-63 247.7 196 67.9
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 1.5e-60 237.3 150 79.3
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 8.3e-59 231.5 224 57.6
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 7.0e-58 228.4 162 67.9
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 5.9e-49 198.7 149 68.5
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.4e-45 187.6 135 71.1
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 1.5e-44 184.1 143 63.6
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 5.4e-42 175.6 145 62.1
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 9.2e-42 174.9 266 37.2
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 5.8e-36 155.6 181 50.8
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 3.7e-35 152.9 300 34.3
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 9.5e-31 138.3 131 58.0
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.1e-30 137.1 105 67.6
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 6.4e-27 125.6 106 61.3
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.2e-25 121.3 91 63.7
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.1e-22 110.5 270 28.5
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 8.1e-22 108.6 116 52.6
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.4e-21 107.8 128 48.4
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 1.8e-21 107.5 64 81.2
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 6.0e-17 92.4 113 47.8
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-15 87.8 113 46.0
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.5e-15 87.8 81 66.7
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 3.4e-12 76.6 91 49.5
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 7.8e-09 65.5 39 76.9
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.0e-08 65.1 45 68.9
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.7e-08 64.3 53 62.3
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 3.9e-08 63.2 60 51.7
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.9e-07 60.8 53 58.5
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.9e-07 60.8 53 58.5


User provided reference genes

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