Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 3.2e-121 438.7 274 100.0
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 2.8e-93 345.9 280 75.7
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 1.2e-56 224.2 213 55.4
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 1.1e-55 221.1 206 54.4
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 1.3e-53 214.2 208 53.4
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.3e-53 214.2 206 57.8
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 5.4e-52 208.8 207 55.1
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 9.0e-47 191.4 207 51.2
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 2.6e-46 189.9 215 47.9
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 1.9e-44 183.7 210 51.0
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 2.7e-43 179.9 209 48.8
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 1.3e-42 177.6 212 44.8
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 3.3e-41 172.9 228 41.2
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 9.6e-41 171.4 149 57.7
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.3e-40 171.0 192 46.9
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 2.8e-40 169.9 220 45.0
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 2.8e-40 169.9 220 45.0
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 4.8e-40 169.1 189 48.1
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.1e-39 167.9 182 48.4
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.1e-39 167.9 219 43.8
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 1.2e-38 164.5 178 47.2
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.0e-38 163.7 145 52.4
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.2e-37 160.2 212 43.9
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 2.2e-37 160.2 153 52.9
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.9e-37 159.8 140 52.1
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 8.4e-37 158.3 209 48.8
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 8.4e-37 158.3 143 52.4
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 3.2e-36 156.4 138 53.6
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 9.3e-36 154.8 153 47.7
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 9.3e-36 154.8 145 50.3
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.6e-35 154.1 210 40.0
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.6e-35 154.1 144 50.7
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 2.1e-35 153.7 138 54.3
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 2.7e-35 153.3 149 49.7
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 4.6e-35 152.5 211 44.1
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.3e-34 151.0 140 50.7
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.9e-34 149.4 165 51.5
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 5.1e-34 149.1 143 52.4
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 6.7e-34 148.7 144 52.8
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.1e-33 147.9 165 47.9
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 2.5e-33 146.7 133 56.4
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 3.3e-33 146.4 188 46.8
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 3.3e-33 146.4 143 53.8
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 9.6e-33 144.8 134 52.2
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 1.3e-32 144.4 134 51.5
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 2.1e-32 143.7 134 52.2
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 8.2e-32 141.7 133 48.1
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.2e-32 141.7 137 48.9
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 4.0e-31 139.4 137 51.1
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 6.9e-31 138.7 134 53.7
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 1.2e-30 137.9 149 45.0
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 4.5e-30 136.0 144 50.0
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 5.8e-30 135.6 148 45.9
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 1.7e-29 134.0 141 49.6
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 4.9e-29 132.5 143 47.6
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 6.5e-29 132.1 144 44.4
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.1e-28 131.3 137 46.7
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 3.2e-28 129.8 144 46.5
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 7.1e-28 128.6 143 48.3
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.1e-27 127.1 142 44.4
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 2.7e-27 126.7 133 45.1
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.7e-27 126.7 92 62.0
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.5e-27 126.3 140 43.6
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 1.3e-26 124.4 142 45.1
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-26 124.0 142 45.8
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 2.3e-26 123.6 142 45.1
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 2.3e-26 123.6 142 45.1
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 2.3e-26 123.6 148 43.9
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.3e-26 123.6 146 44.5
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.3e-26 123.6 144 45.8
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.1e-26 122.5 146 43.2
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 5.1e-26 122.5 151 45.0
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 5.1e-26 122.5 142 46.5
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 8.7e-26 121.7 144 44.4
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 1.5e-25 120.9 144 43.8
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 1.5e-25 120.9 92 62.0
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.5e-25 120.9 141 41.1
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 1.5e-25 120.9 174 48.3
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 1.9e-25 120.6 144 43.8
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.9e-25 120.6 144 44.4
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.3e-25 119.8 92 63.0
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 3.3e-25 119.8 140 47.9
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 1.3e-24 117.9 113 53.1
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 6.3e-24 115.5 133 43.6
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.1e-23 114.8 142 44.4
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 1.5e-22 110.9 89 56.2
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 2.0e-22 110.5 176 40.3
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 3.4e-22 109.8 91 57.1
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.2e-21 107.1 134 40.3
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 2.2e-21 107.1 114 46.5
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.1e-20 104.8 129 40.3
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.9e-20 104.0 110 46.4
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.5e-20 103.6 90 53.3
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 4.2e-20 102.8 128 40.6
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 4.2e-20 102.8 128 40.6
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 5.5e-20 102.4 128 39.8
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 7.2e-20 102.1 139 38.8
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 7.2e-20 102.1 128 40.6
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 7.2e-20 102.1 128 40.6
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 9.3e-20 101.7 95 50.5
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.6e-19 100.9 139 38.8
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.1e-19 100.5 133 39.1
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 4.6e-19 99.4 138 36.2
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 7.9e-19 98.6 136 37.5
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 1.8e-18 97.4 89 51.7
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 3.9e-18 96.3 129 38.0
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 5.1e-18 95.9 137 37.2
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.9e-17 94.0 137 38.7
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 6.9e-15 85.5 141 34.0
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 3.4e-14 83.2 65 58.5
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.0e-13 81.6 110 42.7
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.2e-13 80.5 107 43.0
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.2e-13 80.5 107 43.0
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.9e-13 80.1 70 48.6
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.1e-12 78.2 127 34.6
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 4.2e-12 76.3 91 39.6
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.5e-12 75.9 59 59.3
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 9.4e-12 75.1 61 54.1
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 2.7e-11 73.6 61 54.1
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 4.7e-11 72.8 129 36.4
FAN11G2744 Fragaria x ananassa HOM05D005423 ORTHO05D046010 2.3e-10 70.5 68 51.5
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 8.8e-10 68.6 132 32.6
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.1e-09 68.2 99 33.3
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 1.1e-09 68.2 109 33.0
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.1e-09 68.2 134 28.4
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.5e-09 67.8 44 68.2
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 2.6e-09 67.0 132 32.6
FvH4_3g19970 Fragaria vesca HOM05D005423 ORTHO05D046010 3.3e-09 66.6 68 50.0
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 5.7e-09 65.9 75 38.7
FAN25G3864 Fragaria x ananassa HOM05D046692 ORTHO05D006223 7.4e-09 65.5 41 70.7
TWI79G1492 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 7.4e-09 65.5 116 34.5
FAN26G0124 Fragaria x ananassa HOM05D005784 ORTHO05D007803 9.7e-09 65.1 44 65.9
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 9.7e-09 65.1 99 42.4
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.7e-08 64.3 148 31.1
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.2e-08 63.9 134 27.6
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 4.8e-08 62.8 111 40.5
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 8.2e-08 62.0 99 40.4
FAN09G3285 Fragaria x ananassa HOM05D046692 ORTHO05D006223 8.2e-08 62.0 39 71.8
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 1.1e-07 61.6 99 39.4
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 1.4e-07 61.2 99 30.3
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.4e-07 60.5 120 32.5
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 2.4e-07 60.5 97 39.2
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 3.1e-07 60.1 97 39.2
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 4.1e-07 59.7 94 37.2
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 5.3e-07 59.3 119 35.3
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 5.3e-07 59.3 82 39.0
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 6.9e-07 58.9 99 39.4
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 6.9e-07 58.9 92 37.0
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 6.9e-07 58.9 141 34.8
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 9.1e-07 58.5 49 57.1
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 9.1e-07 58.5 100 34.0
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 1.2e-06 58.2 97 38.1
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.2e-06 58.2 82 39.0
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.5e-06 57.8 99 40.4
Pp3c26_11940 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.5e-06 57.8 135 24.4
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 2.0e-06 57.4 99 40.4
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 2.6e-06 57.0 115 33.9
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 3.4e-06 56.6 100 37.0
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.4e-06 56.6 90 38.9
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 4.5e-06 56.2 126 33.3
Pp3c3_3640 Physcomitrium patens HOM05D022662 ORTHO05D006223 4.5e-06 56.2 134 26.9
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 5.9e-06 55.8 99 38.4
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 5.9e-06 55.8 82 37.8
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 5.9e-06 55.8 90 38.9
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.9e-06 55.8 90 38.9
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.9e-06 55.8 90 38.9
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 5.9e-06 55.8 114 35.1
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 5.9e-06 55.8 75 37.3
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 7.7e-06 55.5 109 34.9
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 7.7e-06 55.5 104 37.5


User provided reference genes

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