Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 3.6e-188 661.4 323 100.0
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 3.9e-166 588.2 324 88.6
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 9.3e-152 540.4 299 86.6
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 4.0e-139 498.4 321 77.6
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.3e-137 493.4 313 79.2
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 2.2e-137 492.7 298 80.2
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 3.3e-133 478.8 282 80.5
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 6.3e-132 474.6 285 79.3
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.6e-130 469.2 279 82.1
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.3e-129 466.8 299 74.9
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.7e-129 466.5 299 74.9
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 9.3e-128 460.7 299 74.2
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.7e-127 459.1 279 79.6
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 4.6e-127 458.4 279 78.9
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.3e-126 456.8 300 75.0
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.3e-126 456.1 282 77.3
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 2.3e-126 456.1 279 79.2
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.0e-126 455.7 287 76.7
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 3.9e-126 455.3 280 77.1
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 5.1e-126 454.9 329 70.8
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 1.5e-125 453.4 281 76.9
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 4.8e-124 448.4 279 76.7
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 8.2e-124 447.6 297 74.4
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 4.1e-123 445.3 286 74.1
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 1.2e-122 443.7 317 70.3
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 3.4e-122 442.2 278 76.3
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.0e-121 440.7 281 74.7
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 8.5e-121 437.6 294 72.8
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 3.2e-120 435.6 281 75.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 5.5e-120 434.9 282 72.7
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 5.5e-120 434.9 308 69.2
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.2e-119 433.7 292 71.2
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 1.6e-119 433.3 341 65.1
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 2.1e-119 433.0 280 73.2
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 4.6e-119 431.8 278 73.7
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 4.6e-119 431.8 278 75.5
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.4e-118 430.3 278 72.7
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.3e-118 429.5 295 70.5
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 3.0e-118 429.1 280 74.3
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 6.7e-118 427.9 277 75.1
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.1e-117 427.2 280 75.0
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 2.6e-117 426.0 291 71.1
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 9.7e-117 424.1 267 72.7
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.3e-116 423.7 317 66.6
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 2.8e-116 422.5 279 73.5
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 3.7e-116 422.2 285 73.0
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 3.7e-116 422.2 277 72.9
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 4.8e-116 421.8 282 72.3
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 8.2e-116 421.0 278 75.2
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.8e-115 419.9 296 68.9
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 4.1e-115 418.7 284 72.2
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 4.1e-115 418.7 284 72.2
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 4.1e-115 418.7 274 73.0
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 4.1e-115 418.7 286 71.0
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 1.2e-114 417.2 281 71.2
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 1.5e-114 416.8 289 71.3
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 2.6e-114 416.0 282 70.6
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 7.7e-114 414.5 283 71.0
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 7.7e-114 414.5 313 70.3
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 2.9e-113 412.5 281 70.5
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 3.8e-113 412.1 281 70.5
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 5.0e-113 411.8 295 69.2
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 5.0e-113 411.8 296 68.6
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 5.0e-113 411.8 296 68.6
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 5.0e-113 411.8 286 70.6
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 8.5e-113 411.0 281 70.5
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 8.5e-113 411.0 296 68.6
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 8.5e-113 411.0 313 69.6
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.1e-112 410.6 280 71.1
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.1e-112 410.6 289 66.8
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.4e-112 410.2 282 70.6
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.2e-112 409.1 308 66.6
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 5.5e-112 408.3 277 70.0
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 9.4e-112 407.5 280 74.6
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 9.4e-112 407.5 277 73.3
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.2e-111 407.1 281 70.1
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.2e-111 407.1 281 70.1
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.2e-111 407.1 281 70.1
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.9e-110 402.1 285 68.8
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.9e-110 402.1 285 68.8
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.5e-109 400.2 237 80.2
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.3e-109 399.1 279 70.6
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 4.4e-109 398.7 261 72.0
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.7e-108 396.7 391 52.9
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 3.1e-107 392.5 354 57.9
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 2.2e-105 386.3 277 66.8
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 5.0e-105 385.2 238 76.1
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.5e-105 384.4 389 52.4
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 5.2e-102 375.2 283 64.0
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 5.7e-101 371.7 237 74.3
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 2.2e-100 369.8 281 65.8
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 8.2e-100 367.9 268 67.2
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 1.7e-97 360.1 284 59.5
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.1e-96 357.5 323 57.6
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.5e-96 357.1 309 57.3
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 1.9e-96 356.7 238 71.4
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.2e-92 343.2 311 56.6
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 3.0e-86 322.8 265 57.4
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 6.3e-84 315.1 186 80.1
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 7.8e-82 308.1 198 72.7
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.7e-81 307.0 220 66.8
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 5.0e-81 305.4 322 51.2
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.6e-79 300.4 217 65.4
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.4e-78 297.4 229 63.8
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 5.7e-77 292.0 275 53.5
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 5.4e-75 285.4 189 71.4
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 7.0e-75 285.0 268 53.0
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.2e-74 284.3 305 49.2
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 7.0e-67 258.5 253 48.6
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 3.1e-62 243.0 144 77.8
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 6.4e-60 235.3 250 45.6
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 5.6e-56 222.2 257 44.0
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 3.6e-55 219.5 238 49.2
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 4.4e-53 212.6 195 55.9
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 5.1e-41 172.6 121 68.6
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 6.6e-41 172.2 113 72.6
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.7e-36 157.5 98 74.5
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 5.1e-33 146.0 89 78.7
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 7.4e-32 142.1 102 74.5
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 5.3e-30 136.0 96 71.9
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.6e-29 133.7 94 68.1
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 5.5e-27 125.9 99 63.6
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 9.3e-27 125.2 92 64.1
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.0e-25 121.7 102 60.8
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 1.1e-24 118.2 96 63.5
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 5.6e-24 115.9 93 67.7
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-23 114.8 89 60.7
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 1.8e-22 110.9 113 48.7
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 4.5e-21 106.3 76 68.4
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.7e-20 104.4 51 90.2
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 1.7e-20 104.4 69 71.0
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 8.4e-20 102.1 55 74.5
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 3.5e-18 96.7 63 68.3
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 3.0e-17 93.6 95 53.7
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 3.3e-16 90.1 43 97.7
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.1e-14 85.1 82 57.3
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 4.5e-13 79.7 38 84.2
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 6.5e-12 75.9 57 61.4
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.5e-12 75.5 85 48.2
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 1.4e-11 74.7 36 75.0
Haze_05939 Corylus avellana HOM05D005284 ORTHO05D006609 1.3e-07 61.6 42 76.2
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.7e-07 61.2 33 69.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.7e-07 61.2 33 69.7


User provided reference genes

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