Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.3e-251 872.8 516 100.0
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 2.9e-123 446.4 527 61.7
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.2e-121 441.0 540 57.6
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 1.3e-75 288.1 534 42.3
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 5.2e-64 249.6 511 40.7
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 8.9e-64 248.8 537 40.8
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.4e-63 246.5 536 39.9
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 5.6e-58 229.6 520 39.4
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.6e-57 228.0 516 39.3
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 4.6e-52 209.9 516 33.1
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 1.7e-51 208.0 523 33.3
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 2.3e-51 207.6 518 33.2
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 2.5e-50 204.1 521 33.6
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 5.3e-48 196.4 549 35.0
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 6.0e-44 183.0 530 30.8
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.3e-43 181.8 551 32.1
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.5e-42 177.6 516 32.8
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.8e-41 174.1 540 33.5
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 4.0e-40 170.2 538 32.5
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 4.5e-39 166.8 523 31.9
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 5.8e-39 166.4 523 31.9
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 3.8e-38 163.7 505 34.1
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 8.4e-38 162.5 514 32.7
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 1.6e-36 158.3 537 30.9
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.0e-35 154.1 524 32.1
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.1e-34 152.1 526 31.6
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 4.3e-34 150.2 512 30.3
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 9.6e-34 149.1 540 30.2
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 1.3e-33 148.7 519 30.6
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.8e-33 147.5 517 31.9
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 4.8e-33 146.7 278 40.3
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 2.9e-30 137.5 549 31.9
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 1.9e-29 134.8 542 30.8
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 2.5e-29 134.4 521 31.9
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 3.5e-28 130.6 522 29.3
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 6.0e-28 129.8 203 44.3
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.3e-27 128.6 526 30.8
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.3e-27 127.9 503 32.6
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.9e-27 127.1 232 40.5
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 5.1e-27 126.7 523 27.3
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 6.7e-27 126.3 547 31.4
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.1e-26 125.6 202 45.5
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.9e-26 124.8 528 29.9
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 2.5e-26 124.4 524 26.5
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 2.5e-26 124.4 524 26.5
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 2.5e-26 124.4 531 27.3
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 3.3e-26 124.0 203 43.3
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 3.3e-26 124.0 526 27.6
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 5.7e-26 123.2 515 28.7
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 5.7e-26 123.2 231 41.1
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 9.6e-26 122.5 532 27.8
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 9.6e-26 122.5 208 41.3
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 1.3e-25 122.1 287 36.9
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.6e-25 121.7 276 35.5
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.6e-25 121.7 551 28.7
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.8e-25 120.9 223 39.5
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 6.2e-25 119.8 509 29.5
RcHm_v2.0_Chr2g0145901 Rosa chinensis HOM05D004305 ORTHO05D035653 1.1e-24 119.0 275 36.4
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 1.8e-24 118.2 505 29.1
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 2.4e-24 117.9 543 28.2
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 2.4e-24 117.9 196 43.9
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 3.1e-24 117.5 507 29.0
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 3.1e-24 117.5 189 44.4
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 5.3e-24 116.7 524 33.6
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 5.3e-24 116.7 521 25.5
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 6.9e-24 116.3 212 40.6
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 9.0e-24 115.9 266 36.1
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 9.0e-24 115.9 514 29.4
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-23 114.4 510 28.8
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 2.6e-23 114.4 503 29.6
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 4.5e-23 113.6 263 35.7
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.0e-22 112.5 512 28.7
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 1.0e-22 112.5 263 36.9
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 1.0e-22 112.5 223 36.3
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 1.3e-22 112.1 203 37.9
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.7e-22 111.7 516 27.9
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 2.9e-22 110.9 178 46.6
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 3.8e-22 110.5 295 33.9
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 5.0e-22 110.2 532 27.1
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 6.5e-22 109.8 183 45.4
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 6.5e-22 109.8 274 32.8
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-21 109.0 237 35.9
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.4e-21 108.6 233 37.3
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 1.9e-21 108.2 197 43.1
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 2.5e-21 107.8 186 41.4
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 3.2e-21 107.5 531 28.2
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 4.2e-21 107.1 517 27.7
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 5.5e-21 106.7 253 33.6
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 5.5e-21 106.7 540 28.5
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 7.1e-21 106.3 195 41.5
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 9.3e-21 105.9 263 35.7
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 9.3e-21 105.9 263 35.7
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 9.3e-21 105.9 190 39.5
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 9.3e-21 105.9 195 37.4
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 9.3e-21 105.9 248 35.1
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-20 105.5 251 33.9
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 1.2e-20 105.5 251 33.9
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.6e-20 105.1 180 41.7
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.6e-20 105.1 190 41.6
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.1e-20 104.8 531 27.9
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 2.7e-20 104.4 249 36.5
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 2.7e-20 104.4 249 36.5
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 4.6e-20 103.6 207 39.1
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 4.6e-20 103.6 194 38.1
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 6.1e-20 103.2 251 33.9
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 6.1e-20 103.2 523 29.4
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 6.1e-20 103.2 190 38.9
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 7.9e-20 102.8 512 25.2
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 1.3e-19 102.1 190 41.1
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 1.3e-19 102.1 188 38.3
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 1.8e-19 101.7 216 39.4
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.8e-19 101.7 512 25.8
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.8e-19 101.7 195 38.5
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-19 101.3 226 35.0
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 2.3e-19 101.3 200 41.5
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 3.0e-19 100.9 177 37.9
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 3.9e-19 100.5 190 40.0
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 5.1e-19 100.1 289 31.8
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 5.1e-19 100.1 528 25.4
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 8.7e-19 99.4 528 26.3
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-18 99.0 190 38.4
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.5e-18 97.8 243 36.2
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 4.3e-18 97.1 190 38.4
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 5.7e-18 96.7 591 27.9
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 5.7e-18 96.7 544 31.1
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 5.7e-18 96.7 525 27.8
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 2.2e-17 94.7 199 37.2
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.8e-17 94.4 521 26.5
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.7e-17 94.0 194 37.6
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 3.7e-17 94.0 194 37.6
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 4.8e-17 93.6 200 39.0
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 8.2e-17 92.8 516 28.1
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-16 92.4 200 36.0
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 2.4e-16 91.3 173 39.3
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 3.1e-16 90.9 200 35.5
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 3.1e-16 90.9 201 36.3
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 5.3e-16 90.1 187 36.4
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 9.0e-16 89.4 524 25.0
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 2.0e-15 88.2 245 29.0
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 2.6e-15 87.8 200 36.0
FvH4_6g34930 Fragaria vesca HOM05D004305 ORTHO05D035653 2.6e-15 87.8 200 35.5
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 4.5e-15 87.0 193 35.8
FAN14G2350 Fragaria x ananassa HOM05D004305 ORTHO05D035653 4.5e-15 87.0 202 35.1
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 4.5e-15 87.0 181 38.7
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 5.9e-15 86.7 193 37.8
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 7.7e-15 86.3 210 36.2
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 7.7e-15 86.3 64 71.9
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 7.7e-15 86.3 179 38.5
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 5.0e-14 83.6 65 61.5
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 1.9e-13 81.6 261 29.5
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 7.2e-13 79.7 177 37.3
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 4.6e-12 77.0 65 58.5
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 6.1e-12 76.6 195 34.4
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.9e-11 73.9 59 62.7
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 2.0e-10 71.6 227 27.8
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 4.3e-10 70.5 180 32.8
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 9.7e-10 69.3 192 31.2
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 1.3e-09 68.9 194 31.4
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 1.4e-08 65.5 192 32.3
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 4.1e-08 63.9 269 26.8
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 9.1e-08 62.8 55 61.8
Os03g0661500 Oryza sativa ssp. japonica HOM05D023203 ORTHO05D025996 1.3e-06 58.9 62 53.2
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 1.7e-06 58.5 62 53.2
Os12g0628300 Oryza sativa ssp. japonica HOM05D023203 ORTHO05D025996 5.0e-06 57.0 50 54.0


User provided reference genes

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