Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 4.0e-168 594.7 311 100.0
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.5e-138 496.5 313 85.0
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.1e-133 480.3 312 82.4
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.2e-110 402.9 316 72.5
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 2.9e-110 402.5 316 71.8
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.1e-109 400.6 316 71.5
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.5e-109 399.4 316 71.5
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.6e-108 395.6 316 70.9
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.8e-107 393.3 304 72.4
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.0e-99 367.5 308 64.0
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 8.8e-99 364.4 312 63.5
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 2.2e-97 359.8 313 63.6
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 4.1e-96 355.5 299 65.2
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 1.5e-95 353.6 298 66.1
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 5.9e-95 351.7 320 63.8
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 2.5e-93 346.3 319 62.1
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 3.2e-93 345.9 315 63.2
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 6.1e-92 341.7 306 61.1
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.4e-91 340.5 312 60.3
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.1e-88 330.9 298 61.4
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 4.5e-87 325.5 316 58.5
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 4.5e-87 325.5 295 61.4
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.3e-86 323.9 296 61.5
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 5.0e-86 322.0 298 62.8
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 6.5e-86 321.6 314 57.6
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 8.5e-86 321.2 297 58.9
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 2.1e-84 316.6 304 57.6
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 4.7e-84 315.5 294 59.9
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 8.0e-84 314.7 299 59.2
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.0e-83 314.3 339 55.2
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 2.3e-83 313.2 299 55.9
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 1.3e-81 307.4 299 61.2
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 1.3e-81 307.4 310 57.4
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.7e-81 307.0 295 56.3
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 1.7e-81 307.0 316 55.1
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.8e-81 306.2 320 55.6
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 3.7e-81 305.8 311 57.2
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.1e-80 304.3 313 55.6
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.1e-80 302.4 318 55.0
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 5.3e-80 302.0 317 57.7
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.2e-79 300.8 317 57.1
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 1.6e-79 300.4 300 55.0
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.0e-78 297.7 301 55.1
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.0e-78 297.7 294 56.5
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 1.7e-78 297.0 308 54.9
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 2.2e-78 296.6 303 55.1
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 9.4e-77 291.2 268 57.8
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 2.1e-76 290.0 323 53.9
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.3e-75 286.6 312 52.2
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 4.0e-75 285.8 302 54.0
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 5.2e-75 285.4 313 51.4
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 5.2e-75 285.4 300 53.0
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 8.8e-75 284.6 310 53.5
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.6e-74 283.1 312 51.9
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 2.6e-74 283.1 312 51.9
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 5.7e-74 282.0 307 55.4
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 5.7e-74 282.0 300 52.0
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 7.5e-74 281.6 310 53.5
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 2.8e-73 279.6 317 52.4
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 4.9e-73 278.9 302 53.0
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 8.3e-73 278.1 311 53.4
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 3.1e-72 276.2 302 51.7
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.2e-71 274.2 310 54.2
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 2.7e-71 273.1 306 54.2
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 4.5e-71 272.3 282 53.2
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 7.7e-71 271.6 303 50.5
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 1.0e-70 271.2 309 51.5
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 1.0e-70 271.2 282 57.8
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.0e-70 271.2 300 52.0
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 1.3e-70 270.8 311 52.1
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.7e-70 270.4 253 58.5
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 2.3e-70 270.0 309 50.8
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 2.9e-70 269.6 311 51.8
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.9e-70 269.6 275 55.3
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 6.6e-70 268.5 311 51.1
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.1e-69 267.7 330 48.8
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.1e-69 267.7 330 48.8
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 2.5e-69 266.5 310 51.0
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 5.5e-69 265.4 313 51.1
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 5.5e-69 265.4 335 50.7
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 9.5e-69 264.6 302 53.0
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 9.5e-69 264.6 308 51.0
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.8e-68 263.1 301 51.5
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 4.7e-68 262.3 306 52.3
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 6.1e-68 261.9 300 50.7
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 6.1e-68 261.9 316 53.2
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 8.0e-68 261.5 297 52.2
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 8.0e-68 261.5 297 52.2
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 6.8e-67 258.5 312 50.0
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 6.8e-67 258.5 298 52.0
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.6e-66 256.5 298 50.3
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.7e-66 255.4 284 51.8
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 7.5e-66 255.0 302 51.7
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 7.5e-66 255.0 301 49.2
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 9.8e-66 254.6 327 50.2
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 9.8e-66 254.6 291 51.9
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 2.2e-65 253.4 300 51.0
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.8e-65 253.1 292 51.4
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.1e-64 251.1 309 52.8
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.6e-63 247.3 316 50.9
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.0e-63 246.9 300 48.0
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.0e-63 246.9 265 52.1
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 2.7e-63 246.5 300 48.0
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.3e-61 239.6 251 56.2
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 5.6e-61 238.8 304 49.3
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 9.5e-61 238.0 289 49.5
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 3.6e-60 236.1 304 50.3
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-59 234.2 305 45.9
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 8.9e-59 231.5 322 46.6
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 5.8e-58 228.8 198 65.2
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 7.5e-58 228.4 271 49.1
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 1.4e-56 224.2 275 48.7
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 5.4e-56 222.2 282 48.9
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 4.6e-55 219.2 258 54.3
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 3.6e-52 209.5 300 45.3
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 8.1e-52 208.4 300 45.3
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.4e-48 196.8 300 43.3
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 7.3e-45 185.3 281 42.0
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.2e-44 184.5 281 42.0
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 4.1e-40 169.5 255 44.3
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 7.8e-39 165.2 158 60.1
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.0e-30 136.7 144 55.6
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 4.3e-29 132.9 274 35.4
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 7.6e-26 122.1 171 44.4
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.7e-22 110.9 128 50.0
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 3.3e-21 106.7 188 38.8
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 3.4e-18 96.7 103 51.5
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.5e-13 81.3 163 39.3
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 5.3e-11 72.8 110 43.6


User provided reference genes

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