Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.7e-307 1058.5 544 100.0
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.6e-252 875.9 545 81.8
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 4.4e-239 831.2 544 79.0
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 5.8e-223 777.7 543 75.1
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 8.7e-219 763.8 539 73.7
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 2.5e-218 762.3 539 74.2
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 9.6e-218 760.4 539 73.8
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.8e-217 758.8 540 72.8
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.2e-217 757.7 544 72.6
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 9.7e-194 680.6 553 67.3
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.8e-193 679.1 554 66.1
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 4.1e-192 675.2 546 65.9
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 2.0e-191 672.9 690 57.0
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 2.9e-190 669.1 555 65.9
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 2.0e-186 656.4 547 64.0
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.1e-181 640.6 553 61.5
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.1e-181 640.6 549 62.8
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.6e-180 636.7 546 61.4
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.5e-178 630.2 556 62.1
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 3.3e-178 629.0 556 61.5
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 3.7e-177 625.5 547 64.5
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 4.8e-177 625.2 549 62.5
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 8.2e-177 624.4 547 61.6
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 3.1e-176 622.5 554 61.2
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.9e-174 615.9 550 60.4
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 5.0e-174 615.1 555 60.9
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.5e-173 613.6 544 62.3
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.2e-172 610.5 546 64.1
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.1e-172 609.8 529 60.9
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 8.0e-172 607.8 547 61.6
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 4.0e-171 605.5 558 61.1
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.0e-170 603.2 528 60.8
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.7e-169 600.1 539 61.0
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.6e-167 593.6 553 58.6
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 6.5e-166 588.2 547 57.6
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.5e-165 587.0 547 58.0
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 5.5e-165 585.1 557 58.5
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 2.1e-164 583.2 544 59.9
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 6.1e-164 581.6 543 59.1
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 1.2e-162 577.4 548 58.0
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.5e-162 577.0 548 57.3
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 4.4e-162 575.5 548 58.2
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 9.8e-162 574.3 548 57.7
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 4.8e-161 572.0 581 55.8
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 8.3e-161 571.2 553 58.6
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 3.1e-160 569.3 553 58.6
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 5.9e-159 565.1 465 63.0
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.3e-158 563.1 548 57.1
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 1.6e-156 557.0 551 56.8
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 2.8e-156 556.2 515 59.4
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 3.6e-156 555.8 554 57.2
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 1.8e-155 553.5 554 55.8
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 8.9e-155 551.2 552 55.6
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 8.9e-155 551.2 537 56.6
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.3e-153 547.4 538 58.6
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 8.3e-153 544.7 538 57.8
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 4.1e-152 542.3 545 55.8
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 2.0e-151 540.0 544 55.3
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 2.7e-151 539.7 549 54.3
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.7e-151 539.7 538 58.0
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 4.5e-151 538.9 546 55.1
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.0e-150 537.7 546 55.9
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 1.3e-150 537.3 546 55.3
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 8.6e-150 534.6 534 55.1
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 8.6e-150 534.6 538 57.6
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 5.6e-149 531.9 546 55.3
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 3.6e-148 529.3 552 55.4
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 1.2e-146 524.2 537 55.1
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 4.4e-146 522.3 545 53.4
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.9e-144 516.9 545 52.7
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.9e-144 516.9 545 53.6
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 3.2e-144 516.2 545 53.6
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 4.1e-144 515.8 543 53.0
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 5.4e-144 515.4 553 53.3
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 7.0e-144 515.0 545 53.6
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.6e-143 513.8 549 53.2
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.7e-143 513.1 544 52.9
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 7.8e-143 511.5 545 52.3
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.0e-142 511.1 544 52.8
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 4.3e-141 505.8 545 53.0
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.8e-139 500.4 547 52.1
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 1.8e-139 500.4 589 49.4
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.5e-138 497.3 518 53.5
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 2.6e-138 496.5 543 53.8
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 7.0e-136 488.4 438 60.7
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 2.7e-135 486.5 388 62.4
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 4.6e-135 485.7 479 55.9
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 7.8e-135 485.0 482 55.2
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.0e-134 484.6 548 52.0
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 8.6e-126 454.9 540 47.6
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 8.1e-124 448.4 352 63.6
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 8.4e-121 438.3 474 52.7
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 8.4e-121 438.3 387 63.6
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 7.1e-120 435.3 462 53.0
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 4.8e-116 422.5 550 48.7
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 9.0e-115 418.3 547 44.1
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.3e-110 403.7 347 61.4
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 3.8e-105 386.3 323 62.5
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 3.1e-99 366.7 557 41.7
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.7e-92 343.2 382 53.9
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.9e-85 320.9 541 39.4
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 5.7e-85 319.3 281 63.0
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.6e-84 317.8 501 40.9
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.8e-84 317.0 561 38.5
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 3.7e-84 316.6 569 38.1
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.0e-82 310.8 387 46.8
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 3.6e-79 300.1 332 52.4
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 3.3e-77 293.5 217 67.3
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 6.1e-71 272.7 422 39.3
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 3.0e-70 270.4 265 57.7
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 6.7e-70 269.2 439 39.6
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.2e-66 258.5 277 53.1
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 3.9e-62 243.4 271 50.2
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.1e-61 241.9 166 70.5
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 2.0e-58 231.1 347 41.8
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.3e-57 228.4 262 48.9
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 9.4e-56 222.2 413 35.4
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.0e-54 216.9 291 47.8
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 9.8e-53 212.2 196 55.6
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.8e-49 200.3 160 64.4
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.1e-39 167.9 155 56.8
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.0e-38 165.6 214 47.7
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 8.3e-36 156.0 157 54.1
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.3e-33 148.7 123 61.8
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 2.3e-33 147.9 143 55.9
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.1e-32 145.6 119 61.3
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 4.3e-32 143.7 275 41.5
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.7e-28 130.6 189 45.5
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.4e-27 128.6 229 41.5
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 3.5e-18 97.4 191 39.8
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 2.5e-16 91.3 120 45.8
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 7.3e-16 89.7 109 48.6
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 4.1e-11 73.9 62 61.3
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 4.1e-11 73.9 62 61.3
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 1.6e-10 72.0 147 41.5
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.2e-07 62.4 81 40.7
Medtr0199s0030 Medicago truncatula HOM05D005606 ORTHO05D006446 8.9e-06 56.2 43 65.1


User provided reference genes

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