Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 2.4e-41 171.8 89 100.0
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 6.7e-28 127.1 96 76.0
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 3.1e-25 118.2 85 77.6
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 1.6e-24 115.9 95 70.5
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 1.3e-23 112.8 82 73.2
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 2.9e-23 111.7 85 70.6
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 5.0e-23 110.9 89 69.7
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 5.0e-23 110.9 62 83.9
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 2.5e-22 108.6 88 65.9
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 2.5e-22 108.6 88 67.0
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 3.2e-22 108.2 89 66.3
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 3.2e-22 108.2 65 80.0
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 4.2e-22 107.8 75 74.7
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 7.2e-22 107.1 67 80.6
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 9.4e-22 106.7 89 65.2
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 9.4e-22 106.7 70 78.6
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 1.2e-21 106.3 89 61.8
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 1.6e-21 105.9 66 71.2
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 2.7e-21 105.1 89 65.2
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 2.7e-21 105.1 75 72.0
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 3.6e-21 104.8 89 65.2
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 4.7e-21 104.4 66 69.7
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 4.7e-21 104.4 61 83.6
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 6.1e-21 104.0 88 64.8
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 8.0e-21 103.6 63 74.6
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 1.0e-20 103.2 89 61.8
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 1.0e-20 103.2 71 73.2
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 2.3e-20 102.1 82 65.9
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 2.3e-20 102.1 86 64.0
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 3.0e-20 101.7 85 65.9
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 4.0e-20 101.3 92 62.0
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 4.0e-20 101.3 68 73.5
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 5.2e-20 100.9 64 78.1
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 6.8e-20 100.5 79 69.6
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 6.8e-20 100.5 64 78.1
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 1.2e-19 99.8 61 78.7
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 1.5e-19 99.4 82 64.6
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 2.0e-19 99.0 82 63.4
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 2.0e-19 99.0 93 63.4
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 2.0e-19 99.0 62 79.0
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 3.4e-19 98.2 64 76.6
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 4.4e-19 97.8 66 77.3
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 4.4e-19 97.8 62 77.4
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 9.8e-19 96.7 73 67.1
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 9.8e-19 96.7 91 61.5
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 9.8e-19 96.7 92 64.1
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 9.8e-19 96.7 92 64.1
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 9.8e-19 96.7 92 64.1
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 9.8e-19 96.7 92 64.1
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 9.8e-19 96.7 89 60.7
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 9.8e-19 96.7 89 60.7
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 1.3e-18 96.3 89 61.8
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 1.3e-18 96.3 89 61.8
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 1.3e-18 96.3 62 74.2
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 1.3e-18 96.3 83 62.7
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 1.3e-18 96.3 92 63.0
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 1.7e-18 95.9 85 63.5
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 2.2e-18 95.5 62 72.6
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 2.2e-18 95.5 62 77.4
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 2.8e-18 95.1 62 72.6
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 2.8e-18 95.1 61 75.4
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 2.8e-18 95.1 60 80.0
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 3.7e-18 94.7 64 70.3
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 3.7e-18 94.7 91 61.5
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 4.8e-18 94.4 93 58.1
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 6.3e-18 94.0 64 73.4
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 6.3e-18 94.0 89 61.8
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 6.3e-18 94.0 63 71.4
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 8.3e-18 93.6 72 65.3
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 8.3e-18 93.6 64 73.4
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 8.3e-18 93.6 93 57.0
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 1.1e-17 93.2 79 62.0
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 1.8e-17 92.4 66 66.7
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 1.8e-17 92.4 61 73.8
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 4.1e-17 91.3 89 59.6
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 9.1e-17 90.1 61 68.9
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 1.6e-16 89.4 68 60.3
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 1.6e-16 89.4 60 73.3
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 3.5e-16 88.2 60 71.7
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 5.9e-16 87.4 60 68.3
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 7.7e-16 87.0 60 70.0
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 1.0e-15 86.7 46 89.1
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 1.3e-15 86.3 65 66.2
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 1.7e-15 85.9 60 68.3
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 6.6e-15 84.0 66 66.7
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 1.5e-14 82.8 69 62.3
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 2.5e-14 82.0 46 80.4
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 1.2e-13 79.7 48 77.1
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 3.6e-13 78.2 66 59.1
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 1.8e-12 75.9 48 70.8
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 8.9e-12 73.6 69 56.5
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 3.4e-11 71.6 65 53.8
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 9.8e-11 70.1 50 58.0
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 1.1e-09 66.6 44 70.5
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 1.1e-09 66.6 64 48.4
SEGI_00564 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 3.3e-06 55.1 49 46.9
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 7.3e-06 53.9 69 39.1


User provided reference genes

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