Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 4.6e-132 474.6 238 100.0
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 2.3e-59 233.0 235 52.8
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 2.4e-56 223.0 235 51.5
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 4.1e-56 222.2 235 50.2
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 4.6e-55 218.8 251 47.4
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 5.0e-54 215.3 234 49.6
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.5e-53 213.8 233 49.4
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.9e-53 213.4 233 48.9
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 2.5e-53 213.0 237 48.1
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 4.3e-53 212.2 235 47.2
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 9.5e-53 211.1 236 48.7
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.2e-52 210.7 232 50.4
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 1.2e-52 210.7 235 47.2
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.2e-52 210.7 234 47.0
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.1e-52 209.9 233 48.5
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 3.6e-52 209.1 250 46.4
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 3.6e-52 209.1 235 47.7
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 6.2e-52 208.4 235 48.1
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 6.2e-52 208.4 255 42.7
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 6.2e-52 208.4 235 48.1
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.1e-51 207.6 235 46.8
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 1.4e-51 207.2 235 49.4
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.3e-51 206.5 238 47.1
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.3e-51 206.5 237 47.3
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 2.3e-51 206.5 236 47.0
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 3.1e-51 206.1 235 45.5
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 3.1e-51 206.1 233 47.6
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 3.1e-51 206.1 236 45.8
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 4.0e-51 205.7 250 44.4
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 4.0e-51 205.7 238 47.5
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 5.2e-51 205.3 238 44.5
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 5.2e-51 205.3 236 45.3
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 6.8e-51 204.9 236 45.3
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 6.8e-51 204.9 236 46.2
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 8.9e-51 204.5 237 47.7
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 8.9e-51 204.5 238 46.6
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 8.9e-51 204.5 237 46.8
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 8.9e-51 204.5 256 44.1
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 8.9e-51 204.5 235 46.8
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.2e-50 204.1 235 44.7
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 1.2e-50 204.1 246 45.9
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.5e-50 203.8 235 43.4
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 1.5e-50 203.8 235 43.4
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 1.5e-50 203.8 235 43.4
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.5e-50 203.8 235 46.8
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 1.5e-50 203.8 235 44.3
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 2.0e-50 203.4 244 45.9
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 2.0e-50 203.4 234 46.6
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 2.6e-50 203.0 250 44.0
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 3.4e-50 202.6 235 46.4
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 4.4e-50 202.2 250 45.2
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 5.8e-50 201.8 249 48.2
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 5.8e-50 201.8 235 48.5
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 5.8e-50 201.8 235 46.4
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 5.8e-50 201.8 259 43.6
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 7.5e-50 201.4 232 47.4
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 7.5e-50 201.4 234 46.6
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 9.8e-50 201.1 234 47.0
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.3e-49 200.7 235 46.4
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.7e-49 200.3 235 46.4
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 2.2e-49 199.9 262 43.9
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 2.2e-49 199.9 233 45.5
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.2e-49 199.9 238 45.8
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.2e-49 199.9 235 47.2
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 2.2e-49 199.9 236 44.5
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 2.9e-49 199.5 249 43.8
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.9e-49 199.5 237 46.4
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 2.9e-49 199.5 235 46.8
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 2.9e-49 199.5 249 45.8
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.9e-49 199.5 249 44.2
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 3.7e-49 199.1 238 47.1
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 4.9e-49 198.7 235 43.0
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 4.9e-49 198.7 235 43.0
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 6.4e-49 198.4 235 43.8
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 8.3e-49 198.0 235 43.0
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 8.3e-49 198.0 247 43.3
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.1e-48 197.6 251 43.8
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 1.4e-48 197.2 239 45.2
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.9e-48 196.8 237 45.6
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.4e-48 196.4 235 45.1
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 2.4e-48 196.4 251 43.4
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 3.2e-48 196.1 235 44.7
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 3.2e-48 196.1 249 44.6
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 3.2e-48 196.1 250 43.6
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 4.1e-48 195.7 235 43.0
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 4.1e-48 195.7 251 41.4
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 5.4e-48 195.3 237 45.1
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 9.2e-48 194.5 235 44.7
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 9.2e-48 194.5 235 45.5
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 9.2e-48 194.5 237 46.4
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 9.2e-48 194.5 249 43.0
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.2e-47 194.1 235 45.5
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.2e-47 194.1 249 42.2
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 3.5e-47 192.6 236 46.2
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 4.6e-47 192.2 235 43.8
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 6.0e-47 191.8 244 42.2
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 7.8e-47 191.4 249 41.8
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.3e-46 190.7 235 43.0
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 2.3e-46 189.9 236 43.2
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 2.3e-46 189.9 249 42.2
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 8.6e-46 188.0 234 43.6
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 8.6e-46 188.0 237 41.4
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 2.5e-45 186.4 235 44.7
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 7.3e-45 184.9 238 43.3
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 9.5e-45 184.5 235 42.1
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 1.2e-44 184.1 235 42.6
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 4.7e-44 182.2 237 42.6
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.2e-42 177.6 226 41.6
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 4.4e-42 175.6 234 39.3
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 4.4e-42 175.6 239 38.9
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 1.7e-41 173.7 148 56.8
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 2.2e-41 173.3 246 38.2
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 5.4e-40 168.7 149 53.0
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.0e-38 164.5 193 44.0
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 6.6e-38 161.8 165 48.5
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.2e-36 157.5 176 46.0
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.1e-36 156.8 127 53.5
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 1.8e-35 153.7 235 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 6.8e-35 151.8 252 35.3
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 2.6e-34 149.8 210 41.4
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 3.8e-33 146.0 115 58.3
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 4.2e-32 142.5 107 59.8
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.5e-29 134.0 232 34.5
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 7.3e-29 131.7 252 32.5
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.0e-26 123.6 239 33.9
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 9.9e-26 121.3 157 40.1
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 6.0e-23 112.1 102 52.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 4.3e-21 105.9 172 36.6
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 4.5e-10 69.3 236 26.3
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.9e-08 63.9 88 44.3
PGR031G2632 Punica granatum HOM05D001916 ORTHO05D003272 7.9e-07 58.5 159 22.6
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 3.9e-06 56.2 158 23.4
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 3.9e-06 56.2 37 59.5


User provided reference genes

Program Settings