Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G080600 Prunus persica HOM05D008587 ORTHO05D010485 3.4e-172 608.2 302 100.0
FAN16G1258 Fragaria x ananassa HOM05D014465 ORTHO05D010485 5.6e-50 202.2 301 44.2
FAN11G1722 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.6e-49 200.7 301 43.9
RcHm_v2.0_Chr5g0014161 Rosa chinensis HOM05D014465 ORTHO05D010485 5.2e-48 195.7 281 48.0
FvH4_3g05550 Fragaria vesca HOM05D014465 ORTHO05D010485 4.4e-47 192.6 291 44.3
RcHm_v2.0_Chr5g0014151 Rosa chinensis HOM05D014465 ORTHO05D010485 6.4e-46 188.7 292 45.5
FAN16G1026 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.3e-43 181.0 284 42.3
FvH4_3g05540 Fragaria vesca HOM05D014465 ORTHO05D010485 3.9e-43 179.5 286 42.7
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 3.8e-38 162.9 290 40.0
FAN25G0862 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.4e-37 161.0 336 38.1
FAN25G2871 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.4e-37 161.0 336 38.1
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 4.2e-37 159.5 286 40.2
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 1.6e-36 157.5 279 40.5
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 1.6e-36 157.5 265 40.0
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 3.0e-35 153.3 284 38.4
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 3.9e-35 152.9 288 39.9
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 1.3e-33 147.9 295 38.0
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 2.8e-33 146.7 286 39.5
TWI73G0910 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 3.6e-33 146.4 288 36.8
TWI73G0974 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 4.8e-33 146.0 294 37.1
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 4.9e-30 136.0 222 38.3
Cfa000945 Carpinus fangiana HOM05D008587 ORTHO05D010485 1.1e-29 134.8 304 38.5
Gohir.D06G142700 Gossypium hirsutum HOM05D008587 ORTHO05D010485 3.5e-28 129.8 285 36.8
Gorai.010G166500 Gossypium raimondii HOM05D008587 ORTHO05D010485 1.0e-27 128.3 284 37.0
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 1.3e-27 127.9 254 36.6
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 1.8e-27 127.5 241 38.2
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 1.8e-27 127.5 241 38.2
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 1.8e-27 127.5 241 38.2
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 1.8e-27 127.5 241 38.2
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 1.8e-27 127.5 241 38.2
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 2.5e-26 123.6 242 38.4
Haze_05596 Corylus avellana HOM05D008587 ORTHO05D010485 3.3e-26 123.2 297 35.4
Gohir.A06G137500 Gossypium hirsutum HOM05D008587 ORTHO05D010485 9.6e-26 121.7 283 36.4
Thecc.06G150600 Theobroma cacao HOM05D008587 ORTHO05D010485 1.3e-25 121.3 292 35.3
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 3.7e-25 119.8 246 34.1
Duzib235G1124 Durio zibethinus HOM05D008587 ORTHO05D010485 1.4e-24 117.9 319 33.2
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 1.8e-24 117.5 225 37.8
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 3.1e-24 116.7 234 37.6
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 6.9e-24 115.5 232 38.8
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 1.5e-23 114.4 238 36.6
Aa31LG10G6860 Aethionema arabicum HOM05D008587 ORTHO05D010485 7.6e-23 112.1 233 36.1
QL05p058191 Quercus lobata HOM05D008587 ORTHO05D010485 4.9e-22 109.4 273 33.0
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 1.9e-21 107.5 241 35.7
Haze_05597 Corylus avellana HOM05D008587 ORTHO05D010485 5.5e-21 105.9 315 33.3
COL.COLO4_31072 Corchorus olitorius HOM05D008587 ORTHO05D010485 2.7e-20 103.6 288 34.4
Lalb_Chr07g0188571 Lupinus albus HOM05D018405 ORTHO05D010485 1.5e-18 97.8 255 31.4
CiPaw.09G123400 Carya illinoinensis HOM05D008587 ORTHO05D010485 7.4e-18 95.5 144 41.0
CiPaw.09G123600 Carya illinoinensis HOM05D008587 ORTHO05D010485 3.7e-17 93.2 221 32.1
QL05p058118 Quercus lobata HOM05D008587 ORTHO05D010485 6.3e-17 92.4 173 37.0
Phvul.002G193400 Phaseolus vulgaris HOM05D018405 ORTHO05D019811 5.5e-13 79.3 342 27.2
Glyma.05G130500 Glycine max HOM05D018405 ORTHO05D019811 1.2e-12 78.2 307 27.7
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 6.7e-11 72.4 115 40.0
CsaV3_1G032450 Cucumis sativus L. HOM05D030426 ORTHO05D029164 3.3e-10 70.1 152 32.2
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 7.4e-10 68.9 122 33.6
Glyma.08G085200 Glycine max HOM05D018405 ORTHO05D010485 7.4e-10 68.9 309 27.2
CANSAT35G0142 Cannabis sativa HOM05D008587 ORTHO05D010485 1.6e-09 67.8 213 28.2
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 1.6e-09 67.8 133 34.6
ClCG03G006870 Citrullus lanatus HOM05D027331 ORTHO05D028994 2.2e-09 67.4 170 31.2
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 2.2e-09 67.4 185 31.9
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 2.8e-09 67.0 95 40.0
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 4.8e-09 66.2 115 36.5
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 6.3e-09 65.9 121 36.4
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 1.1e-08 65.1 145 37.2
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 1.1e-08 65.1 117 36.8
BcaB06g28781 Brassica carinata HOM05D008587 ORTHO05D010485 1.4e-08 64.7 75 45.3
MELO3C035710.2 Cucumis melo HOM05D030426 ORTHO05D029164 1.8e-08 64.3 151 31.1
GSVIVG01021453001 Vitis vinifera HOM05D008587 ORTHO05D010485 2.4e-08 63.9 227 23.8
Haze_05595 Corylus avellana HOM05D007839 ORTHO05D009924 3.1e-08 63.5 179 32.4
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 4.1e-08 63.2 188 28.7
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 5.3e-08 62.8 81 38.3
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 5.3e-08 62.8 116 34.5
Duzib235G0881 Durio zibethinus HOM05D007839 ORTHO05D009924 6.9e-08 62.4 85 40.0
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 9.0e-08 62.0 129 37.2
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 9.0e-08 62.0 95 41.1
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 9.0e-08 62.0 98 40.8
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 1.2e-07 61.6 104 41.3
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 1.5e-07 61.2 153 33.3
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 2.0e-07 60.8 149 33.6
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 2.0e-07 60.8 115 39.1
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 2.6e-07 60.5 97 39.2
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 2.6e-07 60.5 149 34.2
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 3.4e-07 60.1 110 39.1
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 3.4e-07 60.1 127 36.2
GSVIVG01021456001 Vitis vinifera HOM05D031117 ORTHO05D051630 4.5e-07 59.7 206 30.6
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 5.9e-07 59.3 125 33.6
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 5.9e-07 59.3 91 40.7
VMungo0251G0730 Vigna mungo HOM05D018405 ORTHO05D019811 5.9e-07 59.3 293 25.6
arahy.Tifrunner.gnm1.ann1.9ZW3TV Arachis hypogaea HOM05D054726 ORTHO05D019811 7.7e-07 58.9 243 24.7
RcHm_v2.0_Chr5g0014121 Rosa chinensis HOM05D014465 ORTHO05D010485 7.7e-07 58.9 85 50.6
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 1.0e-06 58.5 115 37.4
Gohir.D06G142600 Gossypium hirsutum HOM05D007839 ORTHO05D009924 1.0e-06 58.5 131 32.1
GSVIVG01021457001 Vitis vinifera HOM05D008587 ORTHO05D051630 1.3e-06 58.2 193 25.4
arahy.Tifrunner.gnm1.ann1.EDFF2E Arachis hypogaea HOM05D007839 ORTHO05D009924 2.2e-06 57.4 138 31.2
Gorai.010G166400 Gossypium raimondii HOM05D007839 ORTHO05D009924 2.2e-06 57.4 131 31.3
ATR1091G017 Amborella trichopoda HOM05D007839 ORTHO05D009924 3.8e-06 56.6 122 35.2
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 6.5e-06 55.8 105 36.2
GSVIVG01021451001 Vitis vinifera HOM05D007839 ORTHO05D009924 8.5e-06 55.5 151 28.5


User provided reference genes

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