Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G078700 Prunus persica HOM05D006198 ORTHO05D008226 1.4e-165 586.3 310 100.0
MD10G1263800 Malus domestica HOM05D006198 ORTHO05D008226 8.7e-107 391.0 256 84.0
FvH4_3g05790 Fragaria vesca HOM05D006198 ORTHO05D008226 2.3e-99 366.3 252 80.6
RcHm_v2.0_Chr5g0013711 Rosa chinensis HOM05D006198 ORTHO05D008226 5.1e-99 365.2 250 80.4
FAN11G0340 Fragaria x ananassa HOM05D006198 ORTHO05D008226 2.5e-98 362.8 252 79.8
FAN16G3463 Fragaria x ananassa HOM05D006198 ORTHO05D008226 4.3e-98 362.1 250 80.0
CiPaw.09G125600 Carya illinoinensis HOM05D006198 ORTHO05D008226 6.1e-92 341.7 256 74.2
TAR629G2249 Trochodendron aralioides HOM05D006198 ORTHO05D008226 1.4e-91 340.5 253 72.3
TAR629G0041 Trochodendron aralioides HOM05D006198 ORTHO05D008226 6.7e-91 338.2 245 74.7
CsaV3_6G051650 Cucumis sativus L. HOM05D006198 ORTHO05D008226 5.7e-90 335.1 251 74.1
ClCG01G024530 Citrullus lanatus HOM05D006198 ORTHO05D008226 6.3e-89 331.6 253 73.9
MELO3C007142.2 Cucumis melo HOM05D006198 ORTHO05D008226 4.1e-88 328.9 297 64.6
Dinv30723 Davidia involucrata HOM05D006198 ORTHO05D008226 6.9e-88 328.2 253 72.3
TWI09G1426 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 2.0e-87 326.6 253 73.9
Thecc.06G152500 Theobroma cacao HOM05D006198 ORTHO05D008226 3.4e-87 325.9 254 73.6
Lalb_Chr12g0208941 Lupinus albus HOM05D006198 ORTHO05D008226 8.5e-86 321.2 248 71.8
QL05p058855 Quercus lobata HOM05D006198 ORTHO05D008226 8.5e-86 321.2 251 70.9
TWI53G0219 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 8.5e-86 321.2 254 73.6
Cpa.g.sc166.25 Carica papaya HOM05D006198 ORTHO05D008226 4.2e-85 318.9 253 70.8
COL.COLO4_38286 Corchorus olitorius HOM05D006198 ORTHO05D008226 1.2e-84 317.4 258 70.5
Sed0015649 Sechium edule HOM05D006198 ORTHO05D008226 1.2e-84 317.4 253 69.6
Duzib160G0456 Durio zibethinus HOM05D006198 ORTHO05D008226 2.1e-84 316.6 254 72.0
Actinidia39563 Actinidia chinensis HOM05D006198 ORTHO05D008226 8.0e-84 314.7 253 71.1
Atru.chr10.1293 Acer truncatum HOM05D006198 ORTHO05D008226 1.4e-83 313.9 253 69.2
Nn3g20699 Nelumbo nucifera HOM05D006198 ORTHO05D008226 1.8e-83 313.5 247 71.7
Atru.chr10.1313 Acer truncatum HOM05D006198 ORTHO05D008226 5.2e-83 312.0 253 69.6
CANSAT35G1481 Cannabis sativa HOM05D006198 ORTHO05D008226 5.2e-83 312.0 249 69.1
Eucgr.E02394 Eucalyptus grandis HOM05D006198 ORTHO05D008226 8.8e-83 311.2 252 71.0
vmacro15943 Vaccinium macrocarpon HOM05D006198 ORTHO05D008226 5.7e-82 308.5 257 70.0
Atru.chr10.1297 Acer truncatum HOM05D006198 ORTHO05D008226 9.7e-82 307.8 253 68.4
Nn6g32274 Nelumbo nucifera HOM05D006198 ORTHO05D008226 9.7e-82 307.8 247 70.4
Manes.15G120300 Manihot esculenta HOM05D006198 ORTHO05D008226 1.7e-81 307.0 253 68.0
arahy.Tifrunner.gnm1.ann1.ET305C Arachis hypogaea HOM05D006198 ORTHO05D008226 3.7e-81 305.8 247 67.6
GSVIVG01021428001 Vitis vinifera HOM05D006198 ORTHO05D008226 8.2e-81 304.7 229 73.4
arahy.Tifrunner.gnm1.ann1.8B838V Arachis hypogaea HOM05D006198 ORTHO05D008226 1.8e-80 303.5 247 67.2
Gohir.D09G077900 Gossypium hirsutum HOM05D006198 ORTHO05D008226 4.1e-80 302.4 255 69.8
PGR083G0877 Punica granatum HOM05D006198 ORTHO05D008226 5.3e-80 302.0 247 68.4
Gohir.A09G077700 Gossypium hirsutum HOM05D006198 ORTHO05D008226 7.0e-80 301.6 256 69.9
Lj2A307G26 Lonicera japonica HOM05D006198 ORTHO05D008226 9.1e-80 301.2 259 69.5
Ciclev10016356m.g Citrus clementina HOM05D006198 ORTHO05D008226 1.6e-79 300.4 251 68.9
PSO170G0869 Papaver somniferum HOM05D006198 ORTHO05D008226 1.6e-79 300.4 241 69.7
MBI10_g21114_MAGBIO Magnolia biondii HOM05D006198 ORTHO05D008226 7.7e-79 298.1 250 66.8
Gorai.006G093100 Gossypium raimondii HOM05D006198 ORTHO05D008226 1.0e-78 297.7 255 68.6
Glyma.09G082200 Glycine max HOM05D006198 ORTHO05D008226 1.3e-78 297.4 248 68.1
Lj4g0025062 Lotus japonicus HOM05D006198 ORTHO05D003063 1.3e-78 297.4 250 67.6
Psat7g090320 Pisum sativum HOM05D006198 ORTHO05D008226 1.7e-78 297.0 245 68.2
Potri.011G080300 Populus trichocarpa HOM05D006198 ORTHO05D008226 2.2e-78 296.6 255 66.3
Glyma.15G190700 Glycine max HOM05D006198 ORTHO05D008226 1.1e-77 294.3 246 67.1
Ca_18268_v3 Cicer arietinum L. HOM05D006198 ORTHO05D008226 2.5e-77 293.1 245 66.9
Actinidia07684 Actinidia chinensis HOM05D006198 ORTHO05D008226 4.2e-77 292.4 254 68.1
HanXRQChr01g0020411 Helianthus annuus HOM05D006198 ORTHO05D008226 1.2e-76 290.8 251 66.1
Lsat_1_v5_gn_1_96760 Lactuca sativa HOM05D006198 ORTHO05D008226 2.7e-76 289.7 255 63.9
Phvul.009G219000 Phaseolus vulgaris HOM05D006198 ORTHO05D008226 4.7e-76 288.9 250 66.4
Aqoxy4G00108 Aquilegia oxysepala HOM05D006198 ORTHO05D008226 6.1e-76 288.5 247 66.0
Haze_05575 Corylus avellana HOM05D006198 ORTHO05D008226 1.8e-75 287.0 307 59.3
Cfa000959 Carpinus fangiana HOM05D006198 ORTHO05D008226 2.3e-75 286.6 230 73.0
EL10Ac8g19743 Beta vulgaris HOM05D006198 ORTHO05D008226 4.0e-75 285.8 255 63.9
ECA248G2800 Erigeron canadensis HOM05D006198 ORTHO05D008226 6.7e-75 285.0 247 64.4
VMungo1309G2860 Vigna mungo HOM05D006198 ORTHO05D008226 5.7e-74 282.0 281 60.5
Hma1.2p1_0259F.1_g104290 Hydrangea macrophylla HOM05D006198 ORTHO05D008226 2.2e-73 280.0 247 67.2
AUR62030229 Chenopodium quinoa HOM05D006198 ORTHO05D008226 2.8e-73 279.6 293 57.3
Nitab4.5_0001655g0050 Nicotiana tabacum HOM05D006198 ORTHO05D008226 6.3e-73 278.5 265 63.8
Sc24g0001850 Simmondsia chinensis HOM05D006198 ORTHO05D008226 6.3e-73 278.5 256 65.6
CAN.G650.24 Capsicum annuum HOM05D006198 ORTHO05D008226 1.8e-72 276.9 270 62.2
Medtr4g096750 Medicago truncatula HOM05D006198 ORTHO05D008226 3.1e-72 276.2 248 64.9
AUR62027530 Chenopodium quinoa HOM05D006198 ORTHO05D008226 4.1e-72 275.8 278 59.0
SalBow8G2100 Salvia bowleyana HOM05D006198 ORTHO05D008226 1.6e-71 273.9 267 63.3
MSTRG.16229 Avicennia marina HOM05D006198 ORTHO05D008226 4.5e-71 272.3 262 64.1
Nitab4.5_0005219g0070 Nicotiana tabacum HOM05D006198 ORTHO05D008226 1.0e-70 271.2 265 62.6
SGA_v2.0_scaffold333G48994 Striga asiatica HOM05D006198 ORTHO05D008226 2.2e-70 270.0 262 63.4
Sopen02g019760 Solanum pennellii HOM05D006198 ORTHO05D008226 5.5e-69 265.4 262 62.6
Peaxi162Scf00796g00114 Petunia axillaris HOM05D006198 ORTHO05D008226 2.1e-68 263.5 246 61.8
Migut.M00923 Erythranthe guttata HOM05D006198 ORTHO05D008226 4.7e-68 262.3 263 62.4
PGSC0003DMG401008288 Solanum tuberosum HOM05D006198 ORTHO05D008226 1.0e-67 261.2 265 61.1
CDE02G2137 Ceratophyllum demersum HOM05D006198 ORTHO05D008226 1.8e-67 260.4 244 61.9
DCAR_025303 Daucus carota HOM05D006198 ORTHO05D008226 5.2e-67 258.8 264 59.1
HPP92_023299 Vanilla planifolia HOM05D006198 ORTHO05D008226 6.8e-67 258.5 250 59.6
Cc09_g09250 Coffea canephora HOM05D006198 ORTHO05D008226 8.8e-67 258.1 234 64.1
ATR0585G073 Amborella trichopoda HOM05D006198 ORTHO05D008226 9.8e-66 254.6 250 59.6
Os01g0666500 Oryza sativa ssp. japonica HOM05D006198 ORTHO05D008226 2.8e-65 253.1 274 55.8
HPP92_023266 Vanilla planifolia HOM05D006198 ORTHO05D008226 4.8e-65 252.3 250 58.8
Zm00001eb157440 Zea mays HOM05D006198 ORTHO05D008226 1.3e-62 244.2 245 58.4
Zm00001eb359760 Zea mays HOM05D006198 ORTHO05D008226 3.3e-61 239.6 255 55.7
unitig_578.g16668 Utricularia gibba HOM05D006198 ORTHO05D008226 7.2e-61 238.4 255 58.4
SGA_v2.0_scaffold1G00157 Striga asiatica HOM05D006198 ORTHO05D008226 1.2e-60 237.7 257 59.1
PSO017G1039 Papaver somniferum HOM05D006198 ORTHO05D008226 3.0e-59 233.0 191 66.0
Rhsim02G0156800 Rhododendron simsii HOM05D006198 ORTHO05D008226 6.8e-59 231.9 247 59.1
Aa31LG6G950 Aethionema arabicum HOM05D006198 ORTHO05D008226 3.4e-58 229.6 298 49.7
SEGI_09220 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 4.4e-58 229.2 252 53.2
Sabra11G0070000 Salix brachista HOM05D006198 ORTHO05D008226 2.2e-57 226.9 203 64.0
C07p49570 Brassica napus HOM05D006198 ORTHO05D003063 2.8e-57 226.5 252 56.0
Oeu030914.3 Olea europaea HOM05D006198 ORTHO05D008226 3.7e-57 226.1 302 51.3
Sabra11G0067700 Salix brachista HOM05D006198 ORTHO05D008226 8.3e-57 224.9 203 63.1
A03p51170 Brassica napus HOM05D006198 ORTHO05D003063 1.1e-56 224.6 246 56.9
AL7G36130 Arabidopsis lyrata HOM05D006198 ORTHO05D003063 2.4e-56 223.4 289 49.5
BolC7t45461H Brassica oleracea HOM05D006198 ORTHO05D003063 2.4e-56 223.4 251 55.0
THA.LOC104827723 Tarenaya hassleriana HOM05D006198 ORTHO05D008226 2.4e-56 223.4 257 52.5
Thhalv10024846m.g Eutrema salsugineum HOM05D006198 ORTHO05D003063 5.4e-56 222.2 309 48.5
Carub.0007s2303 Capsella rubella HOM05D006198 ORTHO05D008226 7.0e-56 221.9 251 55.0
BraA03t14199Z Brassica rapa HOM05D006198 ORTHO05D003063 9.2e-56 221.5 297 49.2
Sp7g15810 Schrenkiella parvula HOM05D006198 ORTHO05D008226 2.0e-55 220.3 261 52.1
AagrBONN_evm.TU.Sc2ySwM_228.4358 Anthoceros agrestis HOM05D006198 ORTHO05D008226 2.3e-51 206.8 236 54.2
Solyc02g070680.4 Solanum lycopersicum HOM05D006198 ORTHO05D008226 6.8e-51 205.3 208 59.1
BcaNung05123 Brassica carinata HOM05D006198 ORTHO05D008226 3.2e-48 196.4 230 51.3
BcaNung05671 Brassica carinata HOM05D006198 ORTHO05D008226 9.2e-48 194.9 230 53.0
Pp3c24_15440 Physcomitrium patens HOM05D006198 ORTHO05D008226 9.5e-45 184.9 257 47.1
Mapoly0061s0133 Marchantia polymorpha HOM05D006198 ORTHO05D008226 1.4e-43 181.0 254 50.0
Hund21523 Selenicereus undatus HOM05D006198 ORTHO05D008226 2.4e-40 170.2 160 64.4
SMO361G0608 Selaginella moellendorffii HOM05D006198 ORTHO05D008226 1.7e-38 164.1 240 46.7
CARHR225050 Cardamine hirsuta HOM05D006198 ORTHO05D008226 6.8e-35 152.1 162 58.0
CDE08G0452 Ceratophyllum demersum HOM05D001706 ORTHO05D008226 2.7e-31 140.2 140 58.6
Atru.chr10.1305 Acer truncatum HOM05D006198 ORTHO05D008226 2.4e-27 127.1 120 62.5
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 2.7e-23 113.6 122 54.9
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 2.7e-23 113.6 122 54.9
Atru.chr10.1302 Acer truncatum HOM05D000067 ORTHO05D000280 1.9e-21 107.5 86 66.3
Zm00001eb235600 Zea mays HOM05D006198 ORTHO05D008226 3.6e-20 103.2 114 52.6
CBR_g31781 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-18 98.2 254 34.3
HanXRQChr14g0435081 Helianthus annuus HOM05D006198 ORTHO05D008226 1.2e-18 98.2 111 54.1
SEGI_25377 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 5.8e-18 95.9 93 52.7
Gohir.D05G152000 Gossypium hirsutum HOM05D006198 ORTHO05D008226 5.4e-16 89.4 75 68.0
CBR_g39020 Chara braunii HOM05D006198 ORTHO05D001303 5.1e-14 82.8 192 34.9
Gorai.009G156000 Gossypium raimondii HOM05D006198 ORTHO05D008226 1.9e-13 80.9 79 62.0
MD05G1286000 Malus domestica HOM05D006198 ORTHO05D008226 6.9e-11 72.4 55 83.6
Sabra11G0070100 Salix brachista HOM05D006198 ORTHO05D008226 8.4e-09 65.5 56 69.6
Sabra11G0067800 Salix brachista HOM05D006198 ORTHO05D008226 4.2e-08 63.2 53 71.7
Cre12.g523800 Chlamydomonas reinhardtii HOM05D006198 ORTHO05D008226 8.7e-06 55.5 64 51.6


User provided reference genes

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