Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 5.2e-34 147.1 73 100.0
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 5.3e-31 137.1 71 91.5
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 2.3e-26 121.7 74 81.1
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 4.4e-25 117.5 74 78.4
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 4.4e-25 117.5 74 78.4
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 6.3e-24 113.6 70 80.0
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 8.9e-18 93.2 69 65.2
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 1.2e-17 92.8 74 64.9
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 1.5e-17 92.4 69 63.8
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.2e-16 88.6 69 62.3
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.1e-15 84.3 74 59.5
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.2e-15 83.2 73 63.0
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 9.2e-15 83.2 73 63.0
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.2e-14 82.8 73 63.0
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 2.0e-14 82.0 69 60.9
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.0e-14 82.0 74 58.1
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 4.6e-14 80.9 74 60.8
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.0e-13 79.7 72 58.3
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 1.0e-13 79.7 73 57.5
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 2.9e-13 78.2 71 56.3
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.9e-13 77.8 70 54.3
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 5.0e-13 77.4 71 59.2
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 5.0e-13 77.4 74 54.1
Lalb_Chr07g0188701 Lupinus albus HOM05D006911 ORTHO05D006663 6.6e-13 77.0 77 59.7
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 1.5e-12 75.9 72 54.2
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.5e-12 75.1 72 61.1
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 5.6e-12 73.9 72 52.8
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.5e-12 73.2 72 59.7
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 9.5e-12 73.2 72 54.2
Phvul.002G194700 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 2.8e-11 71.6 73 54.8
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 8.0e-11 70.1 72 56.9
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 1.0e-10 69.7 78 50.0
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 1.0e-10 69.7 76 55.3
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 2.3e-10 68.6 47 63.8
Glyma.05G129200 Glycine max HOM05D006911 ORTHO05D006663 4.0e-10 67.8 72 55.6
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 4.0e-10 67.8 66 57.6
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 5.8e-09 63.9 69 49.3
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 5.8e-09 63.9 76 48.7
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 7.5e-09 63.5 46 67.4
Sed0015743 Sechium edule HOM05D006911 ORTHO05D006663 2.2e-08 62.0 69 53.6
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 3.7e-08 61.2 75 49.3
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 4.9e-08 60.8 69 46.4
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 8.3e-08 60.1 69 50.7
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 1.4e-07 59.3 72 45.8
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 1.4e-07 59.3 72 45.8
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 1.4e-07 59.3 69 52.2
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.4e-07 58.5 66 45.5
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 3.2e-07 58.2 72 44.4
PSO541G4839 Papaver somniferum HOM05D006911 ORTHO05D006663 3.2e-07 58.2 81 40.7
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 4.1e-07 57.8 66 43.9
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 5.4e-07 57.4 67 43.3
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 5.4e-07 57.4 67 43.3
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 5.4e-07 57.4 67 43.3
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 5.4e-07 57.4 68 48.5
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 5.4e-07 57.4 66 43.9
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 7.0e-07 57.0 71 46.5
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 9.2e-07 56.6 71 46.5
Phvul.001G027000 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.2e-06 56.2 69 55.1
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 1.6e-06 55.8 71 49.3
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.6e-06 55.8 61 49.2
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 1.6e-06 55.8 77 46.8
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.0e-06 55.5 52 51.9
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 2.0e-06 55.5 71 47.9
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 2.0e-06 55.5 67 43.3
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 2.0e-06 55.5 71 49.3
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 2.7e-06 55.1 71 49.3
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 2.7e-06 55.1 61 49.2
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 2.7e-06 55.1 69 42.0
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 3.5e-06 54.7 70 38.6
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 3.5e-06 54.7 49 51.0
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 3.5e-06 54.7 71 46.5
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 4.6e-06 54.3 76 43.4
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 4.6e-06 54.3 69 46.4
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 6.0e-06 53.9 74 41.9
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 6.0e-06 53.9 71 46.5
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 7.8e-06 53.5 66 48.5
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 7.8e-06 53.5 66 48.5


User provided reference genes

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