Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 3.0e-117 425.2 219 100.0
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 6.2e-99 364.4 226 85.8
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.4e-98 363.2 223 86.5
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.1e-93 344.7 227 79.7
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 5.1e-93 344.7 225 79.6
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 6.6e-93 344.4 227 79.3
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.6e-93 344.4 227 79.7
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.1e-91 339.3 215 81.4
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.2e-88 329.3 223 74.4
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.9e-88 328.9 226 77.0
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.9e-88 328.9 223 74.4
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 4.9e-88 328.2 224 72.8
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-87 327.0 226 76.5
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.9e-87 326.2 223 74.4
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 7.1e-87 324.3 225 74.2
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.1e-86 322.8 228 71.9
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 6.0e-86 321.2 228 71.5
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 3.0e-85 318.9 222 73.0
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 3.9e-85 318.5 220 72.3
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 3.9e-85 318.5 229 71.2
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.1e-84 317.0 222 72.5
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 1.9e-84 316.2 213 74.2
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.9e-84 316.2 220 72.3
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.5e-84 315.8 228 71.1
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 3.3e-84 315.5 229 70.7
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 7.3e-84 314.3 220 71.4
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 9.6e-84 313.9 228 68.9
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.3e-83 313.5 225 71.6
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.6e-83 313.2 220 71.4
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.6e-83 313.2 230 71.3
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.1e-83 312.8 222 72.5
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.1e-83 312.8 226 70.4
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 2.1e-83 312.8 228 69.7
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.1e-83 312.8 227 72.7
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 4.8e-83 311.6 218 73.4
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 4.8e-83 311.6 226 72.6
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.8e-83 311.6 227 72.7
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.1e-82 310.5 229 69.0
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.8e-82 309.7 229 71.2
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.8e-82 309.7 230 71.3
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.1e-82 308.9 220 70.0
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.1e-82 308.9 230 69.6
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 5.3e-82 308.1 226 69.5
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 9.0e-82 307.4 227 71.4
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.2e-81 307.0 221 68.8
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 2.0e-81 306.2 226 71.2
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 2.0e-81 306.2 223 70.0
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.6e-81 305.8 223 67.7
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.6e-81 305.8 217 68.2
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 3.4e-81 305.4 224 70.5
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 3.4e-81 305.4 219 71.7
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 4.5e-81 305.1 230 67.4
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 4.5e-81 305.1 213 71.8
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 4.5e-81 305.1 219 69.9
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 9.9e-81 303.9 285 58.9
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.3e-80 303.5 230 67.8
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.7e-80 303.1 251 63.7
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.2e-80 302.8 223 68.2
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 4.9e-80 301.6 226 68.6
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 6.4e-80 301.2 213 70.0
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 6.4e-80 301.2 230 68.3
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 6.4e-80 301.2 223 69.1
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 8.4e-80 300.8 222 68.0
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 8.4e-80 300.8 221 67.4
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.4e-79 300.1 225 68.9
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.4e-79 300.1 230 67.8
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.9e-79 299.7 227 67.0
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.9e-79 299.7 210 71.0
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.4e-79 299.3 229 69.0
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 3.2e-79 298.9 229 66.4
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 3.2e-79 298.9 225 68.0
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 4.2e-79 298.5 219 69.9
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 4.2e-79 298.5 224 68.3
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 5.4e-79 298.1 229 65.9
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 5.4e-79 298.1 225 68.9
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 9.3e-79 297.4 222 67.6
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 9.3e-79 297.4 222 68.0
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 9.3e-79 297.4 229 66.4
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 9.3e-79 297.4 225 68.0
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 9.3e-79 297.4 210 71.0
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.2e-78 297.0 229 66.8
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.2e-78 297.0 224 68.8
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.6e-78 296.6 213 70.4
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 2.1e-78 296.2 231 65.8
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.7e-78 295.8 223 67.3
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.5e-78 295.4 207 70.5
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 3.5e-78 295.4 219 68.0
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 3.5e-78 295.4 225 68.0
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 4.6e-78 295.0 225 67.1
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 6.0e-78 294.7 213 70.0
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.0e-77 293.9 222 67.1
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.0e-77 293.9 222 67.1
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.7e-77 293.1 222 66.7
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.7e-77 293.1 226 68.1
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 3.0e-77 292.4 221 66.5
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 3.9e-77 292.0 225 68.9
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 8.7e-77 290.8 247 63.2
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.9e-76 289.7 227 65.6
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 9.6e-76 287.3 221 67.4
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-75 286.6 224 64.7
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-75 286.6 224 65.2
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.1e-75 286.2 215 67.9
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 4.8e-75 285.0 224 65.6
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 8.1e-75 284.3 227 62.1
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-74 283.9 224 64.3
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 6.9e-74 281.2 228 61.0
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.0e-73 279.6 215 66.5
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 1.3e-72 276.9 258 58.1
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 8.4e-72 274.2 248 60.9
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 9.3e-71 270.8 215 63.7
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 9.3e-71 270.8 315 48.6
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-70 270.4 160 85.0
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.2e-70 270.4 228 64.0
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.7e-70 269.2 231 62.8
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 4.6e-70 268.5 233 60.9
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 3.0e-69 265.8 226 62.4
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.9e-69 265.4 226 62.4
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 6.7e-69 264.6 167 77.8
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 2.1e-67 259.6 229 59.4
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 6.9e-66 254.6 170 72.9
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 3.8e-64 248.8 231 61.0
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.4e-63 246.9 226 61.9
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.5e-63 246.1 220 57.3
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.2e-63 245.7 201 68.7
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 2.1e-62 243.0 216 58.8
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.5e-62 242.3 224 55.8
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 3.3e-60 235.7 170 74.7
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 4.3e-60 235.3 220 60.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 9.6e-60 234.2 224 57.1
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.6e-59 233.4 204 61.8
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 3.7e-59 232.3 209 55.5
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 5.3e-58 228.4 173 60.7
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.3e-56 223.8 215 56.3
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.4e-55 220.3 120 84.2
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.6e-54 216.9 245 46.1
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.1e-52 210.7 126 77.0
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.5e-52 210.3 169 67.5
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.5e-52 210.3 181 60.2
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.2e-51 206.5 117 81.2
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-50 204.1 145 71.7
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.2e-47 192.6 166 63.3
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.7e-46 189.5 120 70.0
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.8e-45 186.8 104 77.9
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 4.8e-43 178.7 221 46.6
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.1e-42 176.0 213 49.3
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.7e-40 170.2 168 57.7
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.6e-38 163.7 148 60.8
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-36 157.5 124 71.8
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.3e-35 154.1 307 35.8
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 2.2e-35 153.3 188 50.5
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 1.8e-34 150.2 186 45.2
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 5.5e-31 138.7 81 84.0
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.0e-28 130.2 161 50.3
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 2.4e-26 123.2 75 81.3
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.8e-24 115.9 147 49.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 8.0e-22 108.2 62 79.0
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.0e-21 107.8 82 70.7
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.3e-21 106.7 111 53.2
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 8.8e-21 104.8 107 56.1
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 5.7e-20 102.1 67 71.6
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 2.8e-19 99.8 81 59.3
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 8.3e-19 98.2 166 37.3
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 8.3e-19 98.2 107 53.3
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.1e-18 97.8 59 76.3
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.0e-17 93.6 220 35.0
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.5e-15 87.4 98 52.0
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.1e-14 83.6 95 52.6
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.8e-13 80.5 140 35.0
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.7e-11 73.9 158 39.9
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 2.4e-10 70.1 47 70.2
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 9.2e-10 68.2 73 50.7
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 2.3e-08 63.5 51 62.7
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.5e-07 60.1 37 73.0
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 6.1e-06 55.5 44 61.4


User provided reference genes

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