Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 2.7e-115 418.7 212 100.0
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 1.6e-83 313.2 213 74.6
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 2.7e-83 312.4 215 74.4
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 4.0e-79 298.5 207 73.4
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 4.5e-78 295.0 215 70.7
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.7e-77 293.1 215 70.2
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.2e-77 292.7 215 69.8
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 8.4e-77 290.8 218 70.2
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 1.3e-69 266.9 199 66.8
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 3.2e-60 235.7 203 59.6
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 9.3e-60 234.2 213 59.2
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 1.6e-59 233.4 216 59.3
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 7.9e-59 231.1 212 56.6
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 7.4e-57 224.6 192 59.9
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 9.7e-57 224.2 230 58.3
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 1.6e-56 223.4 212 56.1
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 2.8e-56 222.6 183 63.4
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 3.7e-56 222.2 183 63.4
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 4.8e-56 221.9 183 61.2
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 4.8e-56 221.9 203 57.1
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 1.1e-55 220.7 214 56.1
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 6.9e-55 218.0 212 54.7
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 9.0e-55 217.6 218 55.0
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 1.2e-54 217.2 194 58.2
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 2.6e-54 216.1 212 56.6
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 1.7e-53 213.4 185 58.4
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 2.9e-53 212.6 207 53.6
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 3.8e-53 212.2 214 53.3
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 5.0e-53 211.8 209 57.4
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.6e-51 206.8 174 64.4
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 2.7e-51 206.1 174 64.4
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 7.9e-51 204.5 194 54.1
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.4e-50 203.8 210 51.0
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 2.3e-50 203.0 196 55.6
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 2.3e-50 203.0 194 56.7
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 3.0e-50 202.6 208 54.8
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 5.1e-50 201.8 205 53.7
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 8.8e-50 201.1 210 53.8
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 2.0e-49 199.9 204 54.4
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 4.3e-49 198.7 206 52.4
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.7e-48 196.8 210 49.0
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 2.2e-48 196.4 203 51.7
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 3.7e-48 195.7 169 56.2
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 8.2e-48 194.5 208 47.6
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 1.1e-47 194.1 212 51.9
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 1.4e-47 193.7 207 51.7
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 4.1e-47 192.2 181 56.4
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 6.9e-47 191.4 210 50.0
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 1.2e-46 190.7 199 50.8
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 5.9e-46 188.3 204 52.0
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 1.3e-45 187.2 191 51.3
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.2e-45 186.4 199 51.3
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 2.2e-45 186.4 210 50.0
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 2.2e-45 186.4 204 52.0
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 3.8e-45 185.7 207 49.3
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 6.5e-45 184.9 199 50.8
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 5.5e-44 181.8 184 52.7
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 7.2e-44 181.4 217 47.9
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 7.2e-44 181.4 209 48.8
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.2e-43 180.6 200 54.0
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 1.6e-43 180.3 212 48.1
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 4.7e-43 178.7 209 48.3
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 6.1e-43 178.3 209 47.8
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 6.1e-43 178.3 212 48.6
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 7.9e-43 177.9 198 49.0
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 1.8e-42 176.8 200 53.0
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 5.1e-42 175.3 292 38.7
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 5.1e-42 175.3 203 51.7
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.5e-41 173.7 198 51.5
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.5e-41 173.7 204 47.5
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 2.0e-41 173.3 215 46.5
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 2.0e-41 173.3 212 46.2
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 2.6e-41 172.9 205 49.8
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 2.6e-41 172.9 198 49.5
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 5.7e-41 171.8 203 49.8
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 5.7e-41 171.8 203 49.8
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 1.3e-40 170.6 207 46.9
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 1.3e-40 170.6 198 50.0
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 6.3e-40 168.3 200 48.5
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 5.3e-39 165.2 207 44.4
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 1.2e-38 164.1 185 51.9
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 5.9e-38 161.8 205 45.9
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 1.7e-37 160.2 205 47.8
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 8.5e-37 157.9 216 44.9
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.1e-36 157.5 198 46.0
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 9.4e-36 154.5 197 46.2
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 1.6e-35 153.7 216 42.6
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 3.6e-35 152.5 217 43.8
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 3.6e-35 152.5 217 43.8
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 4.7e-35 152.1 215 42.3
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 4.7e-35 152.1 183 47.0
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 6.1e-35 151.8 215 42.3
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 8.0e-35 151.4 216 43.1
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 8.0e-35 151.4 216 43.1
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 1.0e-34 151.0 217 43.3
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 1.8e-34 150.2 216 42.1
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 3.0e-34 149.4 217 42.9
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 2.6e-33 146.4 197 45.7
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.3e-32 144.1 128 55.5
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 8.2e-32 141.4 202 41.1
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.8e-31 140.2 155 51.6
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 1.6e-30 137.1 147 53.7
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 7.5e-25 118.2 126 50.8
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 1.1e-23 114.4 172 39.5
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 1.1e-23 114.4 205 39.5
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.8e-23 113.6 111 52.3
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 5.4e-23 112.1 211 39.3
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 9.1e-23 111.3 109 55.0
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 7.7e-22 108.2 164 42.7
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 3.2e-20 102.8 75 68.0
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 2.7e-19 99.8 200 37.5
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 4.7e-19 99.0 90 56.7
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 6.8e-18 95.1 146 38.4
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 8.6e-13 78.2 131 39.7
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 2.3e-10 70.1 98 42.9
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 2.9e-08 63.2 59 54.2
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 8.3e-08 61.6 58 51.7
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 3.2e-07 59.7 52 57.7


User provided reference genes

Program Settings