Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 3.5e-46 188.0 98 100.0
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 7.2e-31 137.1 99 76.8
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 6.7e-29 130.6 99 73.7
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 6.7e-29 130.6 99 73.7
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 6.1e-22 107.5 98 63.3
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 1.8e-21 105.9 105 59.0
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.3e-21 105.5 105 60.0
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.0e-21 105.1 105 60.0
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.0e-21 105.1 105 60.0
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.7e-21 104.0 105 59.0
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 8.8e-21 103.6 105 59.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.5e-20 102.8 98 62.2
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 2.2e-19 99.0 101 55.4
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.8e-19 98.6 98 54.1
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 2.8e-19 98.6 103 59.2
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.1e-18 96.7 98 55.1
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.1e-18 96.7 98 54.1
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 5.3e-18 94.4 105 57.1
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 5.3e-18 94.4 96 58.3
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 7.0e-18 94.0 98 54.1
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 9.1e-18 93.6 89 56.2
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 9.1e-18 93.6 98 55.1
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 1.6e-17 92.8 105 54.3
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.0e-17 92.4 98 55.1
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.6e-17 92.0 99 53.5
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.6e-17 92.0 99 54.5
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 3.5e-17 91.7 94 54.3
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.5e-17 91.3 100 58.0
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 5.9e-17 90.9 103 50.5
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 7.7e-17 90.5 103 56.3
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 7.7e-17 90.5 99 51.5
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.0e-16 90.1 103 51.5
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.0e-16 90.1 104 52.9
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.3e-16 89.7 98 54.1
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.2e-16 89.0 99 51.5
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.2e-16 89.0 100 57.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 2.2e-16 89.0 100 57.0
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 2.2e-16 89.0 98 53.1
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.2e-16 89.0 107 52.3
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 3.8e-16 88.2 102 51.0
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 3.8e-16 88.2 101 49.5
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 5.0e-16 87.8 102 53.9
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 6.5e-16 87.4 94 51.1
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 6.5e-16 87.4 101 50.5
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.5e-16 87.4 98 52.0
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 8.5e-16 87.0 88 54.5
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.5e-15 86.3 105 49.5
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.5e-15 85.5 95 53.7
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.5e-15 85.5 92 51.1
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 2.5e-15 85.5 104 49.0
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 2.5e-15 85.5 102 49.0
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 3.2e-15 85.1 101 57.4
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 3.2e-15 85.1 100 51.0
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 4.2e-15 84.7 98 49.0
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 5.5e-15 84.3 88 56.8
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 5.5e-15 84.3 95 51.6
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 5.5e-15 84.3 92 52.2
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 5.5e-15 84.3 92 52.2
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 7.2e-15 84.0 99 55.6
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 9.4e-15 83.6 91 52.7
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 9.4e-15 83.6 64 67.2
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.2e-14 83.2 101 57.4
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.6e-14 82.8 96 52.1
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.1e-14 82.4 92 47.8
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.1e-14 82.4 98 50.0
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 6.1e-14 80.9 86 53.5
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.1e-14 80.9 98 51.0
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 1.0e-13 80.1 99 49.5
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.0e-13 80.1 104 45.2
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.4e-13 79.7 100 47.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 1.4e-13 79.7 101 46.5
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.4e-13 79.7 105 48.6
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 2.3e-13 79.0 99 50.5
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.3e-13 79.0 101 55.4
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.0e-13 78.6 95 45.3
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 4.0e-13 78.2 99 45.5
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 5.2e-13 77.8 97 46.4
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 5.2e-13 77.8 97 46.4
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 5.2e-13 77.8 98 46.9
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 6.8e-13 77.4 99 47.5
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-12 76.3 97 47.4
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-12 76.3 97 47.4
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.5e-12 76.3 97 47.4
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.5e-12 76.3 91 48.4
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 1.5e-12 76.3 98 51.0
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 2.0e-12 75.9 100 48.0
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 2.0e-12 75.9 103 47.6
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 3.4e-12 75.1 102 47.1
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 4.4e-12 74.7 98 46.9
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 4.4e-12 74.7 54 68.5
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 5.7e-12 74.3 99 46.5
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 5.7e-12 74.3 99 47.5
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 5.7e-12 74.3 99 47.5
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 5.7e-12 74.3 99 44.4
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 7.5e-12 73.9 90 45.6
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 7.5e-12 73.9 99 47.5
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 1.7e-11 72.8 104 44.2
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.2e-11 72.4 100 48.0
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.2e-11 72.4 100 48.0
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.2e-11 72.4 100 48.0
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 2.8e-11 72.0 100 47.0
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 2.8e-11 72.0 98 43.9
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 8.3e-11 70.5 54 64.8
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.4e-10 69.7 99 45.5
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.4e-10 69.7 99 45.5
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.4e-10 69.7 99 45.5
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 1.4e-10 69.7 54 63.0
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 2.4e-10 68.9 54 63.0
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.4e-10 68.9 86 44.2
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 4.1e-10 68.2 99 42.4
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 5.4e-10 67.8 99 44.4
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 5.4e-10 67.8 99 44.4
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 5.4e-10 67.8 77 50.6
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 9.1e-10 67.0 88 47.7
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 1.6e-09 66.2 76 52.6
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.7e-09 65.5 98 42.9
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.5e-09 64.7 86 44.2
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 5.9e-09 64.3 104 42.3
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 1.0e-08 63.5 53 56.6
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 1.3e-08 63.2 99 42.4
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 1.7e-08 62.8 98 43.9
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.2e-08 62.4 97 40.2
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.2e-08 62.4 91 45.1
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 2.2e-08 62.4 78 44.9
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 2.2e-08 62.4 97 39.2
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 5.0e-08 61.2 101 40.6
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.0e-08 61.2 97 39.2
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 5.0e-08 61.2 99 42.4
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 6.5e-08 60.8 92 42.4
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 8.5e-08 60.5 100 40.0
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 1.5e-07 59.7 55 58.2
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.2e-07 58.5 54 63.0
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.2e-07 58.2 97 39.2
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 7.2e-07 57.4 98 42.9
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 7.2e-07 57.4 97 38.1
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 7.2e-07 57.4 97 38.1
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 1.2e-06 56.6 67 47.8
Gohir.D01G040250 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.6e-06 56.2 97 38.1
Manes.15G096175 Manihot esculenta HOM05D005059 ORTHO05D004248 2.1e-06 55.8 96 39.6
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 2.7e-06 55.5 97 36.1
Potri.011G108101 Populus trichocarpa HOM05D008890 ORTHO05D004248 3.6e-06 55.1 98 36.7
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 4.7e-06 54.7 60 58.3
Gorai.002G049800 Gossypium raimondii HOM05D008890 ORTHO05D004248 6.1e-06 54.3 97 36.1
Gorai.002G049900 Gossypium raimondii HOM05D008890 ORTHO05D004248 6.1e-06 54.3 97 37.1
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 6.1e-06 54.3 108 40.7
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.0e-06 53.9 100 37.0
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 8.0e-06 53.9 97 36.1


User provided reference genes

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