Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 7.9e-55 216.9 109 100.0
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 4.0e-38 161.4 112 76.8
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 5.0e-33 144.4 102 74.5
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 5.0e-33 144.4 102 74.5
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 6.5e-25 117.5 82 74.4
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.5e-24 116.3 111 59.5
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 3.3e-24 115.2 111 58.6
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 9.5e-24 113.6 99 59.6
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.8e-23 112.1 102 59.8
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 2.8e-23 112.1 97 59.8
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.6e-23 111.7 101 62.4
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.4e-22 109.8 108 56.5
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.3e-22 109.0 102 57.8
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.2e-22 107.8 108 58.3
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.5e-21 106.3 107 57.9
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 5.7e-21 104.4 116 53.4
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 7.5e-21 104.0 90 57.8
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 9.8e-21 103.6 94 57.4
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.7e-20 102.8 84 56.0
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.2e-20 102.4 88 54.5
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.8e-20 102.1 88 62.5
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 3.7e-20 101.7 83 63.9
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 4.9e-20 101.3 93 59.1
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 6.3e-20 100.9 92 58.7
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 8.3e-20 100.5 81 56.8
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.1e-19 100.1 93 53.8
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 1.1e-19 100.1 108 55.6
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.4e-19 99.8 78 61.5
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.8e-19 99.4 81 56.8
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.8e-19 99.4 108 52.8
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.8e-19 99.4 85 62.4
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 3.1e-19 98.6 101 54.5
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 4.1e-19 98.2 100 53.0
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.0e-19 97.4 89 56.2
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 7.0e-19 97.4 70 68.6
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 7.0e-19 97.4 111 53.2
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.2e-18 96.7 78 61.5
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.2e-18 96.7 63 68.3
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.6e-18 96.3 80 57.5
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 2.7e-18 95.5 104 53.8
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 7.8e-18 94.0 110 50.9
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 7.8e-18 94.0 79 57.0
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 7.8e-18 94.0 99 54.5
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 7.8e-18 94.0 66 68.2
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 2.9e-17 92.0 63 65.1
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.9e-17 92.0 63 65.1
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.9e-17 92.0 107 52.3
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 2.9e-17 92.0 93 57.0
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 3.8e-17 91.7 105 55.2
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.8e-17 91.7 107 52.3
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 3.8e-17 91.7 58 72.4
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.8e-17 91.7 58 74.1
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 3.8e-17 91.7 73 63.0
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 3.8e-17 91.7 82 57.3
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.1e-16 90.1 107 45.8
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.1e-16 90.1 58 70.7
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.5e-16 89.7 107 51.4
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 4.3e-16 88.2 95 53.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 4.3e-16 88.2 88 55.7
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 5.6e-16 87.8 83 48.2
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.2e-15 86.7 107 48.6
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.2e-15 86.7 62 59.7
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.6e-15 86.3 84 57.1
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.6e-15 86.3 100 49.0
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.1e-15 85.9 64 65.6
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.8e-15 85.5 79 51.9
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 2.8e-15 85.5 81 56.8
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.7e-15 84.7 98 48.0
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.7e-15 84.7 81 54.3
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 4.7e-15 84.7 88 59.1
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.7e-15 84.7 82 58.5
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 6.1e-15 84.3 87 47.1
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 6.1e-15 84.3 101 49.5
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 6.1e-15 84.3 106 50.0
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 8.0e-15 84.0 66 60.6
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 8.0e-15 84.0 83 55.4
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 8.0e-15 84.0 84 52.4
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 8.0e-15 84.0 84 58.3
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.0e-14 83.6 100 46.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.0e-14 83.6 86 57.0
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.0e-14 83.6 86 57.0
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.0e-14 83.6 84 56.0
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.4e-14 83.2 81 58.0
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 1.4e-14 83.2 108 49.1
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.8e-14 82.8 113 46.0
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 2.3e-14 82.4 82 53.7
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 3.0e-14 82.0 86 54.7
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 5.2e-14 81.3 81 54.3
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 5.2e-14 81.3 83 54.2
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 5.2e-14 81.3 84 51.2
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 5.2e-14 81.3 78 47.4
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 6.8e-14 80.9 90 50.0
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 6.8e-14 80.9 81 54.3
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 6.8e-14 80.9 107 50.5
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 8.9e-14 80.5 101 42.6
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 8.9e-14 80.5 92 46.7
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.2e-13 80.1 106 48.1
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 2.0e-13 79.3 86 51.2
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 4.4e-13 78.2 89 43.8
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 7.5e-13 77.4 94 48.9
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 9.8e-13 77.0 84 52.4
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 9.8e-13 77.0 102 42.2
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.3e-12 76.6 87 50.6
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.3e-12 76.6 66 50.0
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.3e-12 76.6 66 50.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.3e-12 76.6 106 44.3
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.7e-12 76.3 76 53.9
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.2e-12 75.9 58 60.3
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.2e-12 75.9 109 48.6
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.2e-12 75.9 109 48.6
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.9e-12 75.5 104 45.2
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 3.7e-12 75.1 64 51.6
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 3.7e-12 75.1 93 45.2
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 3.7e-12 75.1 64 59.4
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.7e-12 75.1 89 47.2
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.4e-12 74.3 75 54.7
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 8.3e-12 73.9 89 47.2
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 8.3e-12 73.9 89 44.9
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.3e-12 73.9 105 46.7
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.1e-11 73.6 102 41.2
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.9e-11 72.8 57 63.2
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.9e-11 72.8 74 51.4
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.2e-11 72.0 48 62.5
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 3.2e-11 72.0 86 52.3
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 4.1e-11 71.6 58 58.6
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 5.4e-11 71.2 82 52.4
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 7.0e-11 70.9 79 45.6
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 9.2e-11 70.5 68 51.5
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.6e-10 69.7 83 45.8
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 4.6e-10 68.2 100 44.0
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.0e-10 67.8 101 40.6
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.0e-09 67.0 44 72.7
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.0e-09 67.0 61 55.7
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.7e-09 66.2 74 44.6
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.0e-09 65.5 84 50.0
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 3.9e-09 65.1 46 56.5
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 5.0e-09 64.7 87 48.3
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.6e-09 64.3 68 51.5
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 6.6e-09 64.3 84 50.0
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 8.6e-09 63.9 87 48.3
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.5e-08 63.2 80 51.2
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 1.5e-08 63.2 65 52.3
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 2.5e-08 62.4 70 50.0
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.3e-08 62.0 110 37.3
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 5.6e-08 61.2 41 65.9
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 9.5e-08 60.5 85 42.4
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 4.7e-07 58.2 104 40.4
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 1.1e-06 57.0 61 44.3
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 1.4e-06 56.6 64 54.7
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 4.0e-06 55.1 64 53.1


User provided reference genes

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