Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G066100 Prunus persica HOM05D003123 ORTHO05D003492 7.6e-25 116.3 57 100.0
MD15G1186700 Malus domestica HOM05D003123 ORTHO05D003492 1.7e-11 72.0 44 72.7
Prupe.1G551600 Prunus persica HOM05D003123 ORTHO05D003492 9.1e-10 66.2 44 72.7
RcHm_v2.0_Chr2g0090591 Rosa chinensis HOM05D003123 ORTHO05D003492 9.1e-10 66.2 36 80.6
FvH4_1g04960 Fragaria vesca HOM05D003123 ORTHO05D003492 7.7e-09 63.2 47 66.0
FAN19G0040 Fragaria x ananassa HOM05D003123 ORTHO05D003492 7.7e-09 63.2 47 66.0
FAN23G0770 Fragaria x ananassa HOM05D003123 ORTHO05D003492 7.7e-09 63.2 47 66.0
TWI60G0704 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 7.7e-09 63.2 37 78.4
RcHm_v2.0_Chr7g0228681 Rosa chinensis HOM05D003123 ORTHO05D003492 1.3e-08 62.4 37 78.4
THA.LOC104818694 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 1.3e-08 62.4 48 68.8
TWI18G0703 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 2.2e-08 61.6 44 70.5
Nn1g02901 Nelumbo nucifera HOM05D003123 ORTHO05D003492 3.8e-08 60.8 44 65.9
Lj2C730T10 Lonicera japonica HOM05D003123 ORTHO05D003492 5.0e-08 60.5 39 69.2
MD15G1411000 Malus domestica HOM05D003123 ORTHO05D003492 6.5e-08 60.1 44 68.2
TPR.G1421 Trifolium pratense HOM05D003123 ORTHO05D003492 6.5e-08 60.1 46 65.2
TAR636G3452 Trochodendron aralioides HOM05D003123 ORTHO05D003492 8.5e-08 59.7 37 70.3
Lj1C1079T5 Lonicera japonica HOM05D003123 ORTHO05D003492 1.1e-07 59.3 39 69.2
Cfa020612 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.4e-07 58.9 37 73.0
Gorai.009G288800 Gossypium raimondii HOM05D003123 ORTHO05D003492 1.4e-07 58.9 47 61.7
HanXRQChr17g0548851 Helianthus annuus HOM05D003123 ORTHO05D003492 1.4e-07 58.9 40 67.5
Atru.chr7.2717 Acer truncatum HOM05D003123 ORTHO05D003492 1.9e-07 58.5 37 67.6
QL09p005009 Quercus lobata HOM05D003123 ORTHO05D003492 1.9e-07 58.5 40 65.0
RcHm_v2.0_Chr1g0336331 Rosa chinensis HOM05D003123 ORTHO05D003492 1.9e-07 58.5 44 68.2
Sabra19G0092000 Salix brachista HOM05D003123 ORTHO05D003492 1.9e-07 58.5 53 60.4
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 2.5e-07 58.2 39 59.0
FAN28G0861 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.5e-07 58.2 44 63.6
MD02G1048300 Malus domestica HOM05D003123 ORTHO05D003492 3.2e-07 57.8 44 61.4
Manes.02G205100 Manihot esculenta HOM05D003123 ORTHO05D003492 3.2e-07 57.8 36 80.6
Rhsim06G0030700 Rhododendron simsii HOM05D003123 ORTHO05D003492 3.2e-07 57.8 41 65.9
Aqoxy3G04121 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 4.2e-07 57.4 44 61.4
Manes.02G195200 Manihot esculenta HOM05D003123 ORTHO05D003492 4.2e-07 57.4 38 73.7
RcHm_v2.0_Chr6g0290001 Rosa chinensis HOM05D003123 ORTHO05D003492 4.2e-07 57.4 54 59.3
Sed0001108 Sechium edule HOM05D003123 ORTHO05D003492 4.2e-07 57.4 37 70.3
BraA02t06811Z Brassica rapa HOM05D003123 ORTHO05D003492 5.5e-07 57.0 49 59.2
Oeu060760.2 Olea europaea HOM05D003123 ORTHO05D003492 5.5e-07 57.0 46 58.7
ClCG01G026000 Citrullus lanatus HOM05D003123 ORTHO05D003492 7.2e-07 56.6 45 60.0
Atru.chr10.2419 Acer truncatum HOM05D003123 ORTHO05D003492 9.4e-07 56.2 44 65.9
Atru.chr13.2 Acer truncatum HOM05D003123 ORTHO05D003492 9.4e-07 56.2 28 82.1
CiPaw.03G019700 Carya illinoinensis HOM05D003123 ORTHO05D003492 9.4e-07 56.2 41 68.3
TPR.G22518 Trifolium pratense HOM05D003123 ORTHO05D003492 9.4e-07 56.2 35 71.4
FAN12G0368 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.2e-06 55.8 40 72.5
FAN12G2362 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.2e-06 55.8 40 72.5
Glyma.02G293300 Glycine max HOM05D003123 ORTHO05D003492 1.2e-06 55.8 38 65.8
A02p17650 Brassica napus HOM05D003123 ORTHO05D003492 1.6e-06 55.5 44 63.6
FAN07G0983 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.6e-06 55.5 35 71.4
FAN26G3425 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.6e-06 55.5 39 66.7
Potri.013G108600 Populus trichocarpa HOM05D003123 ORTHO05D003492 1.6e-06 55.5 44 65.9
BcaC08g45739 Brassica carinata HOM05D003123 ORTHO05D003492 2.1e-06 55.1 43 62.8
C06p35180 Brassica napus HOM05D003123 ORTHO05D003492 2.1e-06 55.1 43 62.8
BolC6t38625H Brassica oleracea HOM05D003123 ORTHO05D003492 2.1e-06 55.1 43 62.8
Cfa008139 Carpinus fangiana HOM05D003123 ORTHO05D003492 2.1e-06 55.1 37 70.3
Cfa008143 Carpinus fangiana HOM05D003123 ORTHO05D003492 2.1e-06 55.1 37 70.3
Duzib235G1283 Durio zibethinus HOM05D003123 ORTHO05D003492 2.7e-06 54.7 43 62.8
PGR042G0103 Punica granatum HOM05D003123 ORTHO05D003492 2.7e-06 54.7 30 70.0
Sabra13G0093900 Salix brachista HOM05D003123 ORTHO05D003492 2.7e-06 54.7 44 65.9
BcaB03g15643 Brassica carinata HOM05D003123 ORTHO05D003492 3.6e-06 54.3 43 62.8
AUR62018436 Chenopodium quinoa HOM05D003123 ORTHO05D003492 3.6e-06 54.3 48 56.2
AUR62020997 Chenopodium quinoa HOM05D003123 ORTHO05D003492 3.6e-06 54.3 47 55.3
Ciclev10012016m.g Citrus clementina HOM05D003123 ORTHO05D003492 3.6e-06 54.3 43 60.5
Hma1.2p1_0016F.1_g010890 Hydrangea macrophylla HOM05D003123 ORTHO05D003492 3.6e-06 54.3 44 61.4
Potri.019G081100 Populus trichocarpa HOM05D003123 ORTHO05D003492 3.6e-06 54.3 37 73.0
SalBow1G3749 Salvia bowleyana HOM05D003123 ORTHO05D003492 3.6e-06 54.3 42 64.3
Sed0001197 Sechium edule HOM05D003123 ORTHO05D003492 3.6e-06 54.3 37 64.9
Thecc.08G187200 Theobroma cacao HOM05D003123 ORTHO05D003492 3.6e-06 54.3 43 58.1
Atru.chr8.2641 Acer truncatum HOM05D007367 ORTHO05D008866 4.7e-06 53.9 28 75.0
arahy.Tifrunner.gnm1.ann1.SAB2K2 Arachis hypogaea HOM05D003123 ORTHO05D003492 4.7e-06 53.9 41 65.9
MBI01_g42407_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 4.7e-06 53.9 44 56.8
MBI03_g18675_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 4.7e-06 53.9 43 60.5
Sp5g27120 Schrenkiella parvula HOM05D003123 ORTHO05D003492 4.7e-06 53.9 43 65.1
arahy.Tifrunner.gnm1.ann1.HV9XRS Arachis hypogaea HOM05D003123 ORTHO05D003492 6.1e-06 53.5 39 66.7
arahy.Tifrunner.gnm1.ann1.W2RGT3 Arachis hypogaea HOM05D003123 ORTHO05D003492 6.1e-06 53.5 39 66.7
BolC2t08984H Brassica oleracea HOM05D003123 ORTHO05D003492 6.1e-06 53.5 49 55.1
COL.COLO4_33458 Corchorus olitorius HOM05D003123 ORTHO05D003492 6.1e-06 53.5 43 58.1
Migut.K00168 Erythranthe guttata HOM05D003123 ORTHO05D003492 6.1e-06 53.5 44 59.1
CiPaw.04G013100 Carya illinoinensis HOM05D003123 ORTHO05D003492 7.9e-06 53.1 45 60.0
ClCG05G026900 Citrullus lanatus HOM05D003123 ORTHO05D003492 7.9e-06 53.1 45 55.6
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 7.9e-06 53.1 28 78.6
Dinv40311 Davidia involucrata HOM05D003123 ORTHO05D003492 7.9e-06 53.1 35 65.7
Gohir.A05G123100 Gossypium hirsutum HOM05D003123 ORTHO05D003492 7.9e-06 53.1 39 66.7
Gorai.009G128000 Gossypium raimondii HOM05D003123 ORTHO05D003492 7.9e-06 53.1 39 66.7
HanXRQChr10g0308101 Helianthus annuus HOM05D003123 ORTHO05D003492 7.9e-06 53.1 38 63.2
LjContig00238g0006541 Lotus japonicus HOM05D003123 ORTHO05D003492 7.9e-06 53.1 43 55.8
PSO339G0960 Papaver somniferum HOM05D003123 ORTHO05D003492 7.9e-06 53.1 44 54.5


User provided reference genes

Program Settings