Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.2e-117 427.2 342 100.0
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 5.4e-57 225.7 384 45.8
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 4.5e-56 222.6 384 47.9
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.5e-56 222.6 384 47.9
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.5e-56 222.6 385 49.4
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.5e-56 222.6 385 48.8
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.9e-56 222.2 385 49.4
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 5.2e-52 209.1 386 45.1
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.3e-50 204.5 389 46.3
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.1e-49 199.9 384 45.1
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 3.1e-49 199.9 386 40.2
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 4.1e-49 199.5 388 45.6
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.0e-48 197.2 386 44.0
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.3e-47 194.5 390 40.3
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 5.0e-47 192.6 387 44.2
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 6.6e-47 192.2 387 44.7
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 8.6e-47 191.8 387 41.1
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.1e-46 191.4 389 43.7
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.1e-46 191.4 384 41.4
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 1.9e-46 190.7 386 42.2
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 3.3e-46 189.9 386 43.3
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 7.3e-46 188.7 386 43.3
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.2e-45 188.0 388 42.5
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 2.1e-45 187.2 386 42.7
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 3.6e-45 186.4 387 43.2
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 4.7e-45 186.0 387 44.2
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 8.0e-45 185.3 384 43.0
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.4e-44 184.5 386 38.9
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.8e-44 184.1 387 42.9
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.8e-44 184.1 387 38.2
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 5.2e-44 182.6 386 41.2
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 2.0e-43 180.6 387 41.9
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.6e-43 180.3 388 42.8
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.4e-43 179.9 391 43.2
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 7.5e-43 178.7 386 42.7
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.7e-42 177.6 385 38.7
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 2.2e-42 177.2 387 40.8
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 3.7e-42 176.4 382 41.1
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 4.9e-42 176.0 361 44.0
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 6.4e-42 175.6 388 40.5
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 8.3e-42 175.3 383 42.3
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.3e-42 175.3 389 39.3
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 8.3e-42 175.3 387 37.2
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 4.1e-41 172.9 387 42.4
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-40 171.4 388 38.9
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.6e-40 171.0 387 38.0
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 2.7e-40 170.2 384 41.1
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.7e-40 170.2 389 38.8
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 7.8e-40 168.7 386 42.0
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.3e-39 167.9 388 41.2
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.7e-39 167.5 386 39.1
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 1.7e-39 167.5 386 41.7
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 2.3e-39 167.2 396 37.9
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.3e-39 167.2 387 41.6
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 2.3e-39 167.2 392 37.2
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 3.0e-39 166.8 386 40.2
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 5.0e-39 166.0 386 40.9
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.1e-38 164.9 350 41.7
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 1.5e-38 164.5 382 39.5
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.5e-38 164.5 386 40.9
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.5e-38 164.5 392 38.5
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.5e-38 164.5 384 40.9
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 3.3e-38 163.3 380 41.8
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 3.3e-38 163.3 383 41.5
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.6e-38 162.5 385 41.3
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 5.6e-38 162.5 386 38.1
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 7.3e-38 162.2 291 42.3
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 9.5e-38 161.8 388 38.4
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.6e-37 161.0 386 37.0
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.1e-37 160.6 386 41.2
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.1e-37 160.6 385 41.3
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.8e-37 160.2 385 40.5
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 2.8e-37 160.2 385 40.8
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 3.6e-37 159.8 386 39.1
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 4.7e-37 159.5 391 39.6
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 6.2e-37 159.1 386 40.2
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.4e-36 157.9 386 39.4
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 2.3e-36 157.1 384 38.0
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 2.3e-36 157.1 387 39.8
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 3.1e-36 156.8 391 40.2
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.0e-36 156.4 391 35.5
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.5e-35 154.5 371 40.2
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.0e-35 154.1 388 40.7
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 2.6e-35 153.7 385 39.7
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.4e-35 152.9 324 38.6
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 5.8e-35 152.5 388 36.9
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 5.8e-35 152.5 387 39.8
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 9.8e-35 151.8 394 37.1
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.3e-34 151.4 140 58.6
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.3e-34 151.4 385 39.7
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.7e-34 151.0 362 42.5
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 2.2e-34 150.6 393 34.6
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 2.9e-34 150.2 386 41.2
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.7e-34 149.8 386 37.0
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 3.7e-34 149.8 371 39.6
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 4.9e-34 149.4 394 36.3
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 4.9e-34 149.4 387 40.3
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 8.3e-34 148.7 394 36.0
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.1e-33 148.3 389 34.4
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.4e-33 147.9 386 40.2
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 4.1e-33 146.4 387 38.8
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 4.1e-33 146.4 386 39.6
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 5.4e-33 146.0 322 37.3
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.4e-33 146.0 386 35.5
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 7.0e-33 145.6 390 39.5
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 4.6e-32 142.9 393 33.6
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 4.6e-32 142.9 393 33.6
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 4.6e-32 142.9 393 33.6
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.0e-31 140.2 323 37.8
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 3.9e-31 139.8 393 33.6
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 3.9e-31 139.8 393 33.6
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.5e-30 137.9 391 38.9
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.5e-30 137.9 394 39.3
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 4.3e-30 136.3 331 38.7
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 7.3e-30 135.6 371 35.6
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 9.5e-30 135.2 372 35.5
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.7e-29 132.9 357 34.2
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.2e-27 128.3 383 37.9
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 2.0e-27 127.5 386 38.1
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.6e-27 127.1 392 37.2
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.4e-27 126.7 332 35.8
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 9.9e-27 125.2 392 37.2
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 9.9e-27 125.2 392 37.2
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.4e-25 120.6 390 32.1
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.2e-24 118.2 109 65.1
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.3e-23 114.0 118 54.2
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.5e-22 111.3 88 65.9
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 1.9e-22 110.9 383 36.0
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.9e-22 110.9 286 36.0
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 2.5e-22 110.5 117 64.1
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 7.3e-22 109.0 103 72.8
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 9.5e-22 108.6 113 68.1
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 1.6e-21 107.8 393 30.8
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.7e-21 106.3 93 63.4
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 8.1e-21 105.5 98 71.4
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.1e-20 105.1 191 45.0
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 2.4e-20 104.0 395 27.8
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 4.4e-19 99.8 387 35.1
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 7.6e-19 99.0 341 32.3
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 7.6e-19 99.0 384 35.4
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.9e-17 94.4 100 67.0
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 7.1e-17 92.4 101 64.4
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 9.2e-17 92.0 129 41.9
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 2.7e-16 90.5 101 63.4
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 2.7e-16 90.5 101 63.4
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 4.6e-16 89.7 101 63.4
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 3.3e-14 83.6 106 41.5
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 9.6e-14 82.0 106 42.5
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.2e-13 81.6 101 61.4
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.6e-13 81.3 86 53.5
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 6.2e-13 79.3 366 29.5
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.4e-12 78.2 131 51.1
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 4.0e-12 76.6 85 49.4
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 5.3e-12 76.3 54 63.0
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.0e-11 74.3 397 28.0
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 4.4e-11 73.2 92 46.7
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 7.6e-11 72.4 399 28.1
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 4.9e-10 69.7 402 29.6
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.1e-09 68.6 88 45.5
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.2e-08 65.1 90 42.2
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 7.8e-08 62.4 84 40.5


User provided reference genes

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